Aedin Culhane
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/made4 |
| Branch: RELEASE_3_9 |
| Last Commit: 11083d1 |
| Last Changed Date: 2019-05-02 11:53:03 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:19:50 -0400 (Wed, 16 Oct 2019).
| Package 903/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| made4 1.58.0 Aedin Culhane
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: made4 |
| Version: 1.58.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/made4_1.58.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL made4_1.58.0.zip && rm made4_1.58.0.tar.gz made4_1.58.0.zip |
| StartedAt: 2019-10-15 19:16:46 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:17:33 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 47.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/made4_1.58.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL made4_1.58.0.zip && rm made4_1.58.0.tar.gz made4_1.58.0.zip
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install for i386
* installing *source* package 'made4' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'made4'
finding HTML links ... done
NCI60 html
array2ade4 html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/array2ade4.Rd:15: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/array2ade4.Rd:30: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
bet.coinertia html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bet.coinertia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bet.coinertia.Rd:21: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
between.graph html
bga html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bga.Rd:16: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
bga.jackknife html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bga.jackknife.Rd:37: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
bga.suppl html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bga.suppl.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bga.suppl.Rd:19: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bga.suppl.Rd:45: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/bga.suppl.Rd:63: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
checkfac html
chime3D html
cia html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/cia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/cia.Rd:20: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
commonMap html
comparelists html
do3d html
dudi.rwcoa html
forrwcoa html
genes html
genes1d html
getcol html
getdata html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/getdata.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/getdata.Rd:25: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/getdata.Rd:29: missing file link 'vsn'
graph1D html
heatplot html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/heatplot.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
html3D html
jmol3D html
khan html
ord html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/ord.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
overview html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/overview.Rd:10: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
plotarrays html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/plotarrays.Rd:45: file link 's.groups' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/plotarrays.Rd:46: file link 's.match.col' in package 'made4' does not exist and so has been treated as a topic
plotgenes html
prettyDend html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/prettyDend.Rd:11: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
randomiser html
s.var html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/s.var.Rd:65: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/s.var.Rd:65: file link 'plot.cia' in package 'made4' does not exist and so has been treated as a topic
sumstats html
suppl html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/suppl.Rd:17: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/suppl.Rd:38: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCGeQAK/R.INSTALL10fc40892310/made4/man/suppl.Rd:47: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
topgenes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'made4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'made4' as made4_1.58.0.zip
* DONE (made4)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'made4' successfully unpacked and MD5 sums checked