Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJK[L]MNOPQRSTUVWXYZ

INSTALL report for loci2path on tokay2

This page was generated on 2019-10-16 12:40:05 -0400 (Wed, 16 Oct 2019).

Package 880/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
loci2path 1.4.0
Tianlei Xu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/loci2path
Branch: RELEASE_3_9
Last Commit: 0275ba0
Last Changed Date: 2019-05-02 11:54:09 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: loci2path
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/loci2path_1.4.0.tar.gz && rm -rf loci2path.buildbin-libdir && mkdir loci2path.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=loci2path.buildbin-libdir loci2path_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL loci2path_1.4.0.zip && rm loci2path_1.4.0.tar.gz loci2path_1.4.0.zip
StartedAt: 2019-10-15 20:00:23 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:01:11 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 47.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/loci2path_1.4.0.tar.gz && rm -rf loci2path.buildbin-libdir && mkdir loci2path.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=loci2path.buildbin-libdir loci2path_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL loci2path_1.4.0.zip && rm loci2path_1.4.0.tar.gz loci2path_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  317k  100  317k    0     0  4577k      0 --:--:-- --:--:-- --:--:-- 5113k

install for i386

* installing *source* package 'loci2path' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'loci2path'
    finding HTML links ... done
    biocarta                                html  
    check.geneid                            html  
    eqtlSet-class                           html  
    eset.list                               html  
    geneSet-class                           html  
    getHeatmap-methods                      html  
    getMat-methods                          html  
    getPathDescription-methods              html  
    getPval-methods                         html  
    getTissueDegree-methods                 html  
    getWordcloud-methods                    html  
    loci2pathResult-class                   html  
    query-methods                           html  
    query.gr                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'loci2path' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'loci2path' as loci2path_1.4.0.zip
* DONE (loci2path)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'loci2path' successfully unpacked and MD5 sums checked