Ka Yee Yeung
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/iterativeBMAsurv |
| Branch: RELEASE_3_9 |
| Last Commit: 21a53e4 |
| Last Changed Date: 2019-05-02 11:53:10 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:22:00 -0400 (Wed, 16 Oct 2019).
| Package 843/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| iterativeBMAsurv 1.42.0 Ka Yee Yeung
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: iterativeBMAsurv |
| Version: 1.42.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:iterativeBMAsurv.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings iterativeBMAsurv_1.42.0.tar.gz |
| StartedAt: 2019-10-16 04:42:24 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:45:22 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 177.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: iterativeBMAsurv.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:iterativeBMAsurv.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings iterativeBMAsurv_1.42.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/iterativeBMAsurv.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iterativeBMAsurv/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iterativeBMAsurv' version '1.42.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iterativeBMAsurv' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'survival'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'BMA' 'leaps' 'splines'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
iterateBMAsurv.train: no visible global function definition for
'bic.surv'
iterateBMAsurv.train.wrapper: no visible global function definition for
'bic.surv'
Undefined global functions or variables:
bic.surv
* checking Rd files ... NOTE
prepare_Rd: predictBicSurv.Rd:46: Dropping empty section \note
prepare_Rd: predictiveAssessCategory.Rd:52: Dropping empty section \note
prepare_Rd: printTopGenes.Rd:49: Dropping empty section \note
prepare_Rd: singleGeneCoxph.Rd:54: Dropping empty section \note
prepare_Rd: testCens.Rd:13-14: Dropping empty section \details
prepare_Rd: testSurv.Rd:13-14: Dropping empty section \details
prepare_Rd: trainCens.Rd:13-14: Dropping empty section \details
prepare_Rd: trainSurv.Rd:13-14: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
imageplot.iterate.bma.surv 15.90 0.05 15.96
predictiveAssessCategory 8.47 0.10 8.59
predictBicSurv 8.00 0.03 8.04
iterateBMAsurv.train.wrapper 7.43 0.03 7.47
iterateBMAsurv.train 7.09 0.02 7.11
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
imageplot.iterate.bma.surv 11.99 0.02 12.02
predictiveAssessCategory 8.14 0.06 8.20
iterateBMAsurv.train.wrapper 6.94 0.01 6.96
predictBicSurv 6.27 0.04 6.30
iterateBMAsurv.train 6.11 0.00 6.11
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/iterativeBMAsurv.Rcheck/00check.log'
for details.
iterativeBMAsurv.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iterativeBMAsurv_1.42.0.tar.gz && rm -rf iterativeBMAsurv.buildbin-libdir && mkdir iterativeBMAsurv.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iterativeBMAsurv.buildbin-libdir iterativeBMAsurv_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iterativeBMAsurv_1.42.0.zip && rm iterativeBMAsurv_1.42.0.tar.gz iterativeBMAsurv_1.42.0.zip
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install for i386
* installing *source* package 'iterativeBMAsurv' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'iterativeBMAsurv'
finding HTML links ... done
crossVal html
imageplot.iterate.bma.surv html
iterateBMAsurv.train html
iterateBMAsurv.train.predict.assess html
iterateBMAsurv.train.wrapper html
iterativeBMAsurv-internal html
iterativeBMAsurv-package html
predictBicSurv html
predictiveAssessCategory html
printTopGenes html
singleGeneCoxph html
testCens html
testData html
testSurv html
trainCens html
trainData html
trainSurv html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'iterativeBMAsurv' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iterativeBMAsurv' as iterativeBMAsurv_1.42.0.zip
* DONE (iterativeBMAsurv)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'iterativeBMAsurv' successfully unpacked and MD5 sums checked
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iterativeBMAsurv.Rcheck/examples_i386/iterativeBMAsurv-Ex.timings
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iterativeBMAsurv.Rcheck/examples_x64/iterativeBMAsurv-Ex.timings
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