Abbas Rizvi
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/gwasurvivr |
| Branch: RELEASE_3_9 |
| Last Commit: 53d556d |
| Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:41:45 -0400 (Wed, 16 Oct 2019).
| Package 738/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gwasurvivr 1.2.0 Abbas Rizvi
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: gwasurvivr |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gwasurvivr.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings gwasurvivr_1.2.0.tar.gz |
| StartedAt: 2019-10-16 04:20:56 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:29:44 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 527.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gwasurvivr.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gwasurvivr.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings gwasurvivr_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/gwasurvivr.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gwasurvivr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gwasurvivr' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gwasurvivr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
michiganCoxSurv 1.46 0.30 16.33
impute2CoxSurv 1.05 0.06 19.25
plinkCoxSurv 1.08 0.02 26.34
sangerCoxSurv 0.84 0.01 26.24
gdsCoxSurv 0.11 0.04 20.92
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
michiganCoxSurv 1.45 0.08 18.29
impute2CoxSurv 1.17 0.00 16.02
plinkCoxSurv 1.05 0.03 17.51
sangerCoxSurv 0.73 0.01 17.58
gdsCoxSurv 0.11 0.02 13.20
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
gwasurvivr.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gwasurvivr_1.2.0.tar.gz && rm -rf gwasurvivr.buildbin-libdir && mkdir gwasurvivr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gwasurvivr.buildbin-libdir gwasurvivr_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gwasurvivr_1.2.0.zip && rm gwasurvivr_1.2.0.tar.gz gwasurvivr_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
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install for i386
* installing *source* package 'gwasurvivr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gwasurvivr'
finding HTML links ... done
gdsCoxSurv html
impute2CoxSurv html
michiganCoxSurv html
plinkCoxSurv html
sangerCoxSurv html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gwasurvivr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gwasurvivr' as gwasurvivr_1.2.0.zip
* DONE (gwasurvivr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'gwasurvivr' successfully unpacked and MD5 sums checked
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gwasurvivr.Rcheck/examples_i386/gwasurvivr-Ex.timings
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gwasurvivr.Rcheck/examples_x64/gwasurvivr-Ex.timings
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