Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:44:46 -0400 (Wed, 16 Oct 2019).
Package 706/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gpls 1.56.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK |
Package: gpls |
Version: 1.56.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:gpls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings gpls_1.56.0.tar.gz |
StartedAt: 2019-10-16 03:24:17 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 03:24:58 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 40.6 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: gpls.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:gpls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings gpls_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/gpls.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gpls/DESCRIPTION’ ... OK * this is package ‘gpls’ version ‘1.56.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gpls’ can be installed ... WARNING Found the following significant warnings: Note: break used in wrong context: no loop is visible See ‘/Users/biocbuild/bbs-3.9-bioc/meat/gpls.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: glpls1a.Rd:26-28: Dropping empty section \details prepare_Rd: glpls1a.Rd:47: Dropping empty section \note prepare_Rd: glpls1a.cv.error.Rd:24-26: Dropping empty section \details prepare_Rd: glpls1a.cv.error.Rd:42: Dropping empty section \note prepare_Rd: glpls1a.logit.all.Rd:28-30: Dropping empty section \details prepare_Rd: glpls1a.logit.all.Rd:45: Dropping empty section \note prepare_Rd: glpls1a.mlogit.Rd:27-29: Dropping empty section \details prepare_Rd: glpls1a.mlogit.Rd:47: Dropping empty section \note prepare_Rd: glpls1a.mlogit.cv.error.Rd:24: Dropping empty section \details prepare_Rd: glpls1a.mlogit.cv.error.Rd:40: Dropping empty section \note prepare_Rd: glpls1a.train.test.error.Rd:27-29: Dropping empty section \details prepare_Rd: glpls1a.train.test.error.Rd:46: Dropping empty section \note * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/gpls.Rcheck/00check.log’ for details.
gpls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL gpls ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘gpls’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Note: break used in wrong context: no loop is visible Note: break used in wrong context: no loop is visible ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gpls)
gpls.Rcheck/gpls-Ex.timings
name | user | system | elapsed | |
glpls1a | 0.058 | 0.003 | 0.063 | |
glpls1a.cv.error | 0.373 | 0.008 | 0.416 | |
glpls1a.logit.all | 0.062 | 0.002 | 0.063 | |
glpls1a.mlogit | 0.230 | 0.013 | 0.243 | |
glpls1a.mlogit.cv.error | 4.291 | 0.076 | 4.459 | |
glpls1a.train.test.error | 0.019 | 0.002 | 0.019 | |
gpls | 0.118 | 0.021 | 0.139 | |
predict.gpls | 0.130 | 0.026 | 0.157 | |