Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:49:57 -0400 (Wed, 16 Oct 2019).
Package 546/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ffpe 1.28.0 Levi Waldron
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: ffpe |
Version: 1.28.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ffpe.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ffpe_1.28.0.tar.gz |
StartedAt: 2019-10-16 02:47:24 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 02:54:27 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 423.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ffpe.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ffpe.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ffpe_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/ffpe.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ffpe/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ffpe’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ffpe’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CATplot: no visible global function definition for ‘abline’ sampleQC,matrix : makeplots: no visible global function definition for ‘cor’ sampleQC,matrix : makeplots: no visible global function definition for ‘median’ sampleQC,matrix : makeplots: no visible binding for global variable ‘median’ sampleQC,matrix : makeplots: no visible global function definition for ‘na.omit’ sampleQC,matrix : makeplots: no visible global function definition for ‘loess’ sampleQC,matrix : makeplots: no visible global function definition for ‘predict’ sampleQC,matrix : makeplots: no visible global function definition for ‘IQR’ sampleQC,matrix : makeplots: no visible global function definition for ‘abline’ sampleQC,matrix : makeplots: no visible global function definition for ‘legend’ sampleQC,matrix : makeplots: no visible global function definition for ‘lines’ sampleQC,matrix: no visible binding for global variable ‘IQR’ sampleQC,matrix: no visible global function definition for ‘na.omit’ sortedIqrPlot,matrix: no visible binding for global variable ‘quantile’ sortedIqrPlot,matrix: no visible global function definition for ‘segments’ sortedIqrPlot,matrix: no visible binding for global variable ‘IQR’ Undefined global functions or variables: IQR abline cor legend lines loess median na.omit predict quantile segments Consider adding importFrom("graphics", "abline", "legend", "lines", "segments") importFrom("stats", "IQR", "cor", "loess", "median", "na.omit", "predict", "quantile") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed CATplot 7.916 0.614 8.537 ffpe-package 6.088 0.567 6.659 sampleQC 5.086 0.562 5.648 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/ffpe.Rcheck/00check.log’ for details.
ffpe.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ffpe ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ffpe’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ffpe)
ffpe.Rcheck/ffpe-Ex.timings
name | user | system | elapsed | |
CATplot | 7.916 | 0.614 | 8.537 | |
ffpe-package | 6.088 | 0.567 | 6.659 | |
sampleQC | 5.086 | 0.562 | 5.648 | |
sortedIqrPlot | 2.286 | 0.283 | 2.570 | |