Hector Corrada Bravo
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/epivizrChart |
| Branch: RELEASE_3_9 |
| Last Commit: cb21783 |
| Last Changed Date: 2019-05-02 11:54:07 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:38:56 -0400 (Wed, 16 Oct 2019).
| Package 512/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| epivizrChart 1.6.0 Hector Corrada Bravo
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: epivizrChart |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/epivizrChart_1.6.0.tar.gz && rm -rf epivizrChart.buildbin-libdir && mkdir epivizrChart.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrChart.buildbin-libdir epivizrChart_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL epivizrChart_1.6.0.zip && rm epivizrChart_1.6.0.tar.gz epivizrChart_1.6.0.zip |
| StartedAt: 2019-10-15 20:49:41 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:52:12 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 151.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/epivizrChart_1.6.0.tar.gz && rm -rf epivizrChart.buildbin-libdir && mkdir epivizrChart.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrChart.buildbin-libdir epivizrChart_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL epivizrChart_1.6.0.zip && rm epivizrChart_1.6.0.tar.gz epivizrChart_1.6.0.zip
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install for i386
* installing *source* package 'epivizrChart' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'epivizrChart'
finding HTML links ... done
BlocksTrack-methods html
EpivizBlocksTrack-class html
EpivizChart-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizChart-class.Rd:20: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
EpivizChartDataMgr-class html
EpivizDataSource-class html
EpivizEnvironment-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizEnvironment-class.Rd:14: file link 'EpivizViewComponent' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizEnvironment-class.Rd:18: file link 'EpivizDataSource' in package 'epivizrChart' does not exist and so has been treated as a topic
EpivizGenesTrack-class html
EpivizHeatmapPlot-class html
EpivizIGVTrack-class html
EpivizLinePlot-class html
EpivizLineTrack-class html
EpivizNavigation-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizNavigation-class.Rd:18: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
EpivizScatterPlot-class html
EpivizStackedBlocksTrack-class html
EpivizStackedLinePlot-class html
EpivizStackedLineTrack-class html
EpivizViewComponent-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizViewComponent-class.Rd:20: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
EpivizWebComponent-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizWebComponent-class.Rd:14: file link 'EpivizChartDataMgr' in package 'epivizrChart' does not exist and so has been treated as a topic
HeatmapPlot-methods html
LinePlot-methods html
LineTrack-methods html
ScatterPlot-methods html
StackedBlocksTrack-methods html
StackedLinePlot-methods html
StackedLineTrack-methods html
append_region-methods html
bcode_eset html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/bcode_eset.Rd:7: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/bcode_eset.Rd:12: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
cgi_gr html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/cgi_gr.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/cgi_gr.Rd:12: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
chart_default_settings_colors html
dot-constructURL html
dot-initialize_chart html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/dot-initialize_chart.Rd:12: file link 'EpivizChart' in package 'epivizrChart' does not exist and so has been treated as a topic
dot-register_all_the_epiviz_things html
dot-settings_as_df html
epivizChart html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:12: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:14: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:18: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:18: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
epivizEnv html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:5: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:25: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:19: file link 'EpivizWebComponent' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:22: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
epivizNav html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:5: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:27: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:17: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:17: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:24: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
get_available_chart_types html
get_registered_data_types html
json_parser html
finding level-2 HTML links ... done
json_writer html
plot-EpivizEnvironment-ANY-method html
rand_id html
sumexp html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/sumexp.Rd:12: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
tcga_colon_blocks html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_blocks.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_blocks.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
tcga_colon_curves html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_curves.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_curves.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
tcga_colon_expression html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_expression.Rd:23: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_expression.Rd:7: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_expression.Rd:20: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'epivizrChart' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizrChart' as epivizrChart_1.6.0.zip
* DONE (epivizrChart)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'epivizrChart' successfully unpacked and MD5 sums checked