Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:17:02 -0400 (Wed, 16 Oct 2019).
Package 509/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
epihet 1.0.0 Xiaowen Chen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: epihet |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:epihet.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings epihet_1.0.0.tar.gz |
StartedAt: 2019-10-16 01:28:53 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 01:32:15 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 202.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: epihet.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:epihet.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings epihet_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/epihet.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘epihet/DESCRIPTION’ ... OK * this is package ‘epihet’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Depends: includes the non-default packages: 'GenomicRanges', 'IRanges', 'S4Vectors', 'ggplot2', 'foreach', 'Rtsne', 'igraph' Adding so many packages to the search path is excessive and importing selectively is preferable. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘epihet’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed epiPathway 17.542 0.084 17.643 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.9-bioc/meat/epihet.Rcheck/00check.log’ for details.
epihet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL epihet ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘epihet’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epihet)
epihet.Rcheck/epihet-Ex.timings
name | user | system | elapsed | |
compMatrix | 0.815 | 0.008 | 0.823 | |
epiBox | 0.056 | 0.000 | 0.056 | |
epiMA | 0.009 | 0.000 | 0.009 | |
epiMap | 0.138 | 0.008 | 0.147 | |
epiPCA | 0.448 | 0.000 | 0.705 | |
epiPathway | 17.542 | 0.084 | 17.643 | |
epiTSNE | 0.344 | 0.008 | 0.352 | |
jaccard | 0.010 | 0.000 | 0.009 | |
makeGR | 0.130 | 0.179 | 0.333 | |
moduleAnno | 0.332 | 0.016 | 0.347 | |
moduleSim | 0.129 | 0.020 | 0.148 | |
moduleVisual | 0.160 | 0.020 | 0.181 | |
readGR | 0.020 | 0.053 | 0.073 | |
shannon | 0 | 0 | 0 | |
splitn | 0 | 0 | 0 | |
summarize | 0.121 | 0.008 | 0.129 | |
userobj | 0.027 | 0.000 | 0.027 | |