Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:38:39 -0400 (Tue, 09 Apr 2019).
Package 391/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
deco 0.99.56 Francisco Jose Campos Laborie
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: deco |
Version: 0.99.56 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:deco.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings deco_0.99.56.tar.gz |
StartedAt: 2019-04-09 00:19:26 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 00:23:03 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 216.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: deco.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:deco.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings deco_0.99.56.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/deco.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘deco/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘deco’ version ‘0.99.56’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘deco’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotAssociationH: no visible binding for global variable ‘Subclasses’ plotAssociationH: no visible binding for global variable ‘h.statistic’ plotAssociationH: no visible binding for global variable ‘input.info’ plotAssociationH: no visible binding for global variable ‘DECO.subclasses’ plotAssociationH: no visible binding for global variable ‘Samples’ plotAssociationH: no visible binding for global variable ‘Features’ plotGainingH: no visible binding for global variable ‘omic.data’ plotGainingH: no visible binding for global variable ‘h.statistic’ plotGainingH: no visible binding for global variable ‘ranking’ Undefined global functions or variables: DECO.subclasses Features Samples Subclasses h.statistic input.info omic.data ranking * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/deco.Rcheck/00check.log’ for details.
deco.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL deco ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘deco’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (deco)
deco.Rcheck/deco-Ex.timings
name | user | system | elapsed | |
ALCLdata | 0.280 | 0.019 | 0.301 | |
AnnotateDECO | 0.157 | 0.008 | 0.166 | |
NSCAcluster | 1.899 | 0.753 | 2.680 | |
deco-class | 0.002 | 0.001 | 0.002 | |
deco-package | 0.225 | 0.013 | 0.240 | |
decoNSCA | 0.185 | 0.017 | 0.202 | |
decoRDA | 0.200 | 0.008 | 0.210 | |
decoReport | 0.176 | 0.009 | 0.184 | |
featureTable | 0.161 | 0.008 | 0.171 | |
plotAssociationH | 3.828 | 0.071 | 3.921 | |
plotDECOProfile | 0.143 | 0.009 | 0.152 | |
plotGainingH | 1.714 | 0.015 | 1.735 | |
plotHeatmapH | 0.152 | 0.006 | 0.158 | |