Daniel Kosztyla
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/cancerclass |
| Branch: RELEASE_3_9 |
| Last Commit: 6229697 |
| Last Changed Date: 2019-05-02 11:53:36 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:26:30 -0400 (Wed, 16 Oct 2019).
| Package 206/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cancerclass 1.28.0 Daniel Kosztyla
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: cancerclass |
| Version: 1.28.0 |
| Command: rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cancerclass.buildbin-libdir cancerclass_1.28.0.tar.gz |
| StartedAt: 2019-10-16 08:50:01 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 08:50:33 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 31.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: cancerclass_1.28.0.zip |
| PackageFileSize: 1.619 MiB |
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### Running command:
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### rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cancerclass.buildbin-libdir cancerclass_1.28.0.tar.gz
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install for i386
* installing *source* package 'cancerclass' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c copa.c -o copa.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c cor.c -o cor.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c fc.c -o fc.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c help.c -o help.o
help.c: In function 'welch_df':
help.c:263:19: warning: variable 'mean2' set but not used [-Wunused-but-set-variable]
double mean1, mean2, var1, var2 = 0.0;
^
help.c:263:12: warning: variable 'mean1' set but not used [-Wunused-but-set-variable]
double mean1, mean2, var1, var2 = 0.0;
^
help.c: In function 'bsortdesc':
help.c:344:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable]
int i,k,anzahl=0;
^
help.c: In function 'bsort':
help.c:368:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable]
int i,k,anzahl=0;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ort.c -o ort.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c os.c -o os.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c shift.c -o shift.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c statistics.c -o statistics.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c student.c -o student.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c throw.c -o throw.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c welch.c -o welch.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c wilcox.c -o wilcox.o
wilcox.c: In function 'wilcoxon':
wilcox.c:37:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable]
int overall = 0;
^
wilcox.c: In function 'pwilcoxon':
wilcox.c:75:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable]
int overall = 0;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o cancerclass.dll tmp.def copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/cancerclass.buildbin-libdir/00LOCK-cancerclass/00new/cancerclass/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cancerclass'
finding HTML links ... done
GOLUB html
cancerclass-internal html
cancerclass-package html
fit html
loo html
nvalidate html
nvalidation-class html
plot html
plot3d html
predict,predictor-method html
prediction-class html
predictor-class html
summary,prediction-method html
validate html
validation-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cancerclass' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c copa.c -o copa.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c cor.c -o cor.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c fc.c -o fc.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c help.c -o help.o
help.c: In function 'welch_df':
help.c:263:19: warning: variable 'mean2' set but not used [-Wunused-but-set-variable]
double mean1, mean2, var1, var2 = 0.0;
^
help.c:263:12: warning: variable 'mean1' set but not used [-Wunused-but-set-variable]
double mean1, mean2, var1, var2 = 0.0;
^
help.c: In function 'bsortdesc':
help.c:344:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable]
int i,k,anzahl=0;
^
help.c: In function 'bsort':
help.c:368:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable]
int i,k,anzahl=0;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ort.c -o ort.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c os.c -o os.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c shift.c -o shift.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c statistics.c -o statistics.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c student.c -o student.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c throw.c -o throw.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c welch.c -o welch.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c wilcox.c -o wilcox.o
wilcox.c: In function 'wilcoxon':
wilcox.c:37:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable]
int overall = 0;
^
wilcox.c: In function 'pwilcoxon':
wilcox.c:75:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable]
int overall = 0;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o cancerclass.dll tmp.def copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/cancerclass.buildbin-libdir/cancerclass/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cancerclass' as cancerclass_1.28.0.zip
* DONE (cancerclass)