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BUILD BIN report for bumphunter on tokay2

This page was generated on 2019-10-16 12:27:16 -0400 (Wed, 16 Oct 2019).

Package 196/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bumphunter 1.26.0
Rafael A. Irizarry
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/bumphunter
Branch: RELEASE_3_9
Last Commit: 606bee8
Last Changed Date: 2019-05-02 11:53:39 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bumphunter
Version: 1.26.0
Command: rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bumphunter.buildbin-libdir bumphunter_1.26.0.tar.gz
StartedAt: 2019-10-16 08:49:24 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 08:50:09 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 44.9 seconds
RetCode: 0
Status:  OK  
PackageFile: bumphunter_1.26.0.zip
PackageFileSize: 4.478 MiB

Command output

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### Running command:
###
###   rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bumphunter.buildbin-libdir bumphunter_1.26.0.tar.gz
###
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install for i386

* installing *source* package 'bumphunter' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bumphunter'
    finding HTML links ... done
    TT                                      html  
    annotateNearest                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOsQiXy/R.INSTALL2b3c255e44bb/bumphunter/man/annotateNearest.Rd:31: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOsQiXy/R.INSTALL2b3c255e44bb/bumphunter/man/annotateNearest.Rd:34: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOsQiXy/R.INSTALL2b3c255e44bb/bumphunter/man/annotateNearest.Rd:59: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
    annotateTranscripts                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOsQiXy/R.INSTALL2b3c255e44bb/bumphunter/man/annotateTranscripts.Rd:39: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic
    bumphunter                              html  
    clusterMaker                            html  
    dummyData                               html  
    getSegments                             html  
    locfitByCluster                         html  
    loessByCluster                          html  
    matchGenes                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOsQiXy/R.INSTALL2b3c255e44bb/bumphunter/man/matchGenes.Rd:41: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOsQiXy/R.INSTALL2b3c255e44bb/bumphunter/man/matchGenes.Rd:55: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
    regionFinder                            html  
    runmedByCluster                         html  
    smoother                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bumphunter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bumphunter' as bumphunter_1.26.0.zip
* DONE (bumphunter)