Package: birta

Version: 1.28.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/birta_1.28.0.tar.gz && rm -rf birta.buildbin-libdir && mkdir birta.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=birta.buildbin-libdir birta_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL birta_1.28.0.zip && rm birta_1.28.0.tar.gz birta_1.28.0.zip

StartedAt: 2019-10-15 18:51:52 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 18:52:48 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 56.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/birta_1.28.0.tar.gz && rm -rf birta.buildbin-libdir && mkdir birta.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=birta.buildbin-libdir birta_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL birta_1.28.0.zip && rm birta_1.28.0.tar.gz birta_1.28.0.zip
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install for i386

* installing *source* package 'birta' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BayesNetwork.cpp -o BayesNetwork.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BayesNetworkNC.cpp -o BayesNetworkNC.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c getStates.cpp -o getStates.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o birta.dll tmp.def BayesNetwork.o BayesNetworkNC.o getStates.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/birta.buildbin-libdir/00LOCK-birta/00new/birta/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'birta'
    finding HTML links ... done
    EColiNetwork                            html  
    EColiOxygen                             html  
    TFexpr                                  html  
    birta-methods                           html  
    birta-package                           html  
    birta.run                               html  
    genesets                                html  
    get_potential_swaps                     html  
    limmaAnalysis-methods                   html  
    limmaAnalysis                           html  
    plotConvergence                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp8g4Ofp/R.INSTALLdc043cd1d1f/birta/man/plotConvergence.Rd:17: file link 'birta' in package 'birta' does not exist and so has been treated as a topic
    potential_swaps                         html  
    sim                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'birta' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BayesNetwork.cpp -o BayesNetwork.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BayesNetworkNC.cpp -o BayesNetworkNC.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c getStates.cpp -o getStates.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o birta.dll tmp.def BayesNetwork.o BayesNetworkNC.o getStates.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/birta.buildbin-libdir/birta/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'birta' as birta_1.28.0.zip
* DONE (birta)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'birta' successfully unpacked and MD5 sums checked