Multiple platform build/check report for BioC 3.9 - CHECK report for biosvd on tokay2

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biosvd.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings biosvd_2.20.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/biosvd.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biosvd/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'biosvd' version '2.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biosvd' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.checkColorMaps : : no visible global function definition
  for 'rainbow'
plot,Eigensystem-EigensystemPlotParam: no visible global function
  definition for 'pdf'
plot,Eigensystem-EigensystemPlotParam: no visible global function
  definition for 'dev.off'
plot,Eigensystem-EigensystemPlotParam: no visible global function
  definition for 'rainbow'
Undefined global functions or variables:
  dev.off pdf rainbow
Consider adding
  importFrom("grDevices", "dev.off", "pdf", "rainbow")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/biosvd.Rcheck/00check.log'
for details.

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biosvd_2.20.0.tar.gz && rm -rf biosvd.buildbin-libdir && mkdir biosvd.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biosvd.buildbin-libdir biosvd_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biosvd_2.20.0.zip && rm biosvd_2.20.0.tar.gz biosvd_2.20.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  523k  100  523k    0     0  8736k      0 --:--:-- --:--:-- --:--:-- 9878k

install for i386

* installing *source* package 'biosvd' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biosvd'
    finding HTML links ... done
    Eigensystem-class                       html  
    EigensystemPlotParam-class              html  
    HeLaData                                html  
    StarvationData                          html  
    YeastData                               html  
    assayColorMap-set                       html  
    biosvd                                  html  
    compute-methods                         html  
    contrast-set                            html  
    exclude-methods                         html  
    featureColorMap-set                     html  
    figure-set                              html  
    filenames-set                           html  
    negativeValues-set                      html  
    palette-set                             html  
    path-set                                html  
    plot-methods                            html  
    plots-set                               html  
    prefix-set                              html  
    project-methods                         html  
    report-methods                          html  
    whichAssays-set                         html  
    whichEigenassays-set                    html  
    whichEigenfeatures-set                  html  
    whichFeatures-set                       html  
    whichPolarAxes-set                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biosvd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biosvd' as biosvd_2.20.0.zip
* DONE (biosvd)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'biosvd' successfully unpacked and MD5 sums checked

CHECK report for biosvd on tokay2

Summary

Command output

Installation output

Tests output

Example timings