Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:47:17 -0400 (Wed, 16 Oct 2019).
Package 76/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
arrayMvout 1.42.0 V. Carey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: arrayMvout |
Version: 1.42.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:arrayMvout.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings arrayMvout_1.42.0.tar.gz |
StartedAt: 2019-10-16 00:36:20 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 00:43:31 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 430.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: arrayMvout.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:arrayMvout.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings arrayMvout_1.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/arrayMvout.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘arrayMvout/DESCRIPTION’ ... OK * this is package ‘arrayMvout’ version ‘1.42.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘arrayMvout’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Biobase’ ‘affy’ ‘lumi’ ‘methods’ ‘parody’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .affyArrayOutliers: no visible global function definition for ‘sampleNames’ .affyArrayOutliers: no visible global function definition for ‘fitPLM’ .affyArrayOutliers: no visible global function definition for ‘boxplot’ .affyArrayOutliers: no visible global function definition for ‘Mbox’ .affyArrayOutliers: no visible global function definition for ‘AffyRNAdeg’ .affyArrayOutliers: no visible global function definition for ‘prcomp’ .affyArrayOutliers :: no visible global function definition for ‘mv.calout.detect’ .affyArrayOutliers: no visible global function definition for ‘mv.calout.detect’ .lumiArrayOutliers: no visible global function definition for ‘lumiQ’ .lumiArrayOutliers: no visible global function definition for ‘prcomp’ .lumiArrayOutliers: no visible global function definition for ‘mv.calout.detect’ .lumiArrayOutliers : : no visible global function definition for ‘mv.calout.detect’ ArrayOutliers,data.frame-numeric-ANY: no visible global function definition for ‘prcomp’ ArrayOutliers,data.frame-numeric-ANY: no visible global function definition for ‘mv.calout.detect’ ArrayOutliers,data.frame-numeric-ANY : : no visible global function definition for ‘mv.calout.detect’ plot,arrOutStruct-ANY: no visible global function definition for ‘biplot’ plot,arrOutStruct-ANY: no visible global function definition for ‘prcomp’ Undefined global functions or variables: AffyRNAdeg Mbox biplot boxplot fitPLM lumiQ mv.calout.detect prcomp sampleNames Consider adding importFrom("graphics", "boxplot") importFrom("stats", "biplot", "prcomp") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed ArrayOutliers-methods 26.211 1.054 27.281 ArrayOutliers 20.543 0.751 21.293 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/arrayMvout.Rcheck/00check.log’ for details.
arrayMvout.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL arrayMvout ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘arrayMvout’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arrayMvout)
arrayMvout.Rcheck/arrayMvout-Ex.timings
name | user | system | elapsed | |
ArrayOutliers-methods | 26.211 | 1.054 | 27.281 | |
ArrayOutliers | 20.543 | 0.751 | 21.293 | |
arrOutStruct-class | 0.140 | 0.006 | 0.144 | |