Ti-Tai Wang
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/anamiR |
| Branch: RELEASE_3_9 |
| Last Commit: 7974d7d |
| Last Changed Date: 2019-05-02 11:54:04 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:37:04 -0400 (Wed, 16 Oct 2019).
| Package 51/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| anamiR 1.12.0 Ti-Tai Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: anamiR |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:anamiR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings anamiR_1.12.0.tar.gz |
| StartedAt: 2019-10-16 01:53:57 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 02:33:38 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 2380.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: anamiR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:anamiR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings anamiR_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/anamiR.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'anamiR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'anamiR' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'anamiR' can be installed ... OK
* checking installed package size ... NOTE
installed size is 21.6Mb
sub-directories of 1Mb or more:
data 1.7Mb
extdata 19.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GSEA_ana: no visible binding for global variable 'msigdb.gs'
Undefined global functions or variables:
msigdb.gs
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSEA_res 9.20 0.58 211.88
enrichment 5.23 0.61 689.41
heat_vis 1.82 0.14 7.10
GSEA_ana 1.45 0.12 17.45
database_support 1.19 0.03 40.10
miR_converter 0.32 0.00 5.35
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSEA_res 11.30 0.39 219.17
enrichment 7.05 0.75 686.54
database_support 1.80 0.03 33.27
heat_vis 1.58 0.11 7.47
miR_converter 0.19 0.02 5.53
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/anamiR.Rcheck/00check.log'
for details.
anamiR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/anamiR_1.12.0.tar.gz && rm -rf anamiR.buildbin-libdir && mkdir anamiR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=anamiR.buildbin-libdir anamiR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL anamiR_1.12.0.zip && rm anamiR_1.12.0.tar.gz anamiR_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 10.4M 100 10.4M 0 0 62.6M 0 --:--:-- --:--:-- --:--:-- 65.4M
install for i386
* installing *source* package 'anamiR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'anamiR'
finding HTML links ... done
GSEA_ana html
GSEA_res html
anamiR html
database_support html
differExp_continuous html
differExp_discrete html
egSymb html
enrichment html
heat_vis html
miR_converter html
mirna html
mrna html
msigdb.gs html
multi_Differ html
negative_cor html
normalization html
pheno.mirna html
pheno.mrna html
table_pre html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'anamiR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'anamiR' as anamiR_1.12.0.zip
* DONE (anamiR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'anamiR' successfully unpacked and MD5 sums checked
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anamiR.Rcheck/examples_i386/anamiR-Ex.timings
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anamiR.Rcheck/examples_x64/anamiR-Ex.timings
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