Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:22:26 -0400 (Tue, 09 Apr 2019).
Package 33/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
affyPLM 1.59.0 Ben Bolstad
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK |
Package: affyPLM |
Version: 1.59.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL affyPLM |
StartedAt: 2019-04-08 18:39:20 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 18:40:11 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 50.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL affyPLM ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘affyPLM’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c LESN.c -o LESN.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_avg_log.c -o PLM_avg_log.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_biweight.c -o PLM_biweight.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_log_avg.c -o PLM_log_avg.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_medianPM.c -o PLM_medianPM.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_median_logPM.c -o PLM_median_logPM.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_medianpolish.c -o PLM_medianpolish.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PLM_modelmatrix.c -o PLM_modelmatrix.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c SCAB.c -o SCAB.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c chipbackground.c -o chipbackground.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c common_types.c -o common_types.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c do_PLMrlm.c -o do_PLMrlm.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c do_PLMrma.c -o do_PLMrma.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c do_PLMthreestep.c -o do_PLMthreestep.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c idealmismatch.c -o idealmismatch.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c lm_threestep.c -o lm_threestep.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c matrix_functions.c -o matrix_functions.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c nthLargestPM.c -o nthLargestPM.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c preprocess.c -o preprocess.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c psi_fns.c -o psi_fns.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c qnorm_probeset.c -o qnorm_probeset.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c read_rmaexpress.c -o read_rmaexpress.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rlm_PLM.c -o rlm_PLM.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rlm_threestep.c -o rlm_threestep.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rma_PLM.c -o rma_PLM.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rma_common.c -o rma_common.o rma_common.c:60:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c scaling.c -o scaling.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c threestep.c -o threestep.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c threestep_PLM.c -o threestep_PLM.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c threestep_common.c -o threestep_common.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c threestep_summary.c -o threestep_summary.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c threestep_summary_methods.c -o threestep_summary_methods.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c transfns.c -o transfns.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o affyPLM.so LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/affyPLM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (affyPLM)