Package: Xeva

Version: 0.99.19

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Xeva.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Xeva_0.99.19.tar.gz

StartedAt: 2019-04-09 04:24:54 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 04:27:26 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 152.0 seconds

RetCode: 0

Status:  OK

CheckDir: Xeva.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Xeva.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Xeva_0.99.19.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/Xeva.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Xeva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Xeva’ version ‘0.99.19’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Xeva’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 31 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/Xeva.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Xeva
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘Xeva’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Xeva)

name	user	system	elapsed
ABC	0.007	0.002	0.009
AUC	0.036	0.008	0.044
TGI	0.001	0.001	0.001
addExperimentalDesign	0.184	0.009	0.197
angle	0.015	0.003	0.018
batchInfo	0.188	0.009	0.198
createXevaSet	0.173	0.024	0.197
dosePlot	0.793	0.050	0.841
downloadXevaSet	0.045	0.012	0.802
drugInform	0.176	0.002	0.183
drugSensitivitySig	0.806	0.050	0.855
getExperiment	0.256	0.012	0.271
getMolecularProfiles	0.172	0.002	0.177
lmm	0.161	0.010	0.170
mRECIST	0.003	0.000	0.004
modelInfo	0.158	0.004	0.164
plotPDX	2.223	0.162	2.376
plotmRECIST	3.594	0.250	3.830
response	0.273	0.007	0.282
selectModelIds	0.258	0.009	0.266
sensitivity	0.173	0.005	0.178
setResponse	4.668	0.269	4.913
slope	0.013	0.001	0.015
subsetXeva	0.308	0.014	0.326
summarizeMolecularProfiles	0.209	0.008	0.221
summarizeResponse	0.389	0.015	0.410
waterfall	1.393	0.081	1.476