Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:36:59 -0400 (Tue, 09 Apr 2019).
Package 1658/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TxRegInfra 1.3.6 VJ Carey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: TxRegInfra |
Version: 1.3.6 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TxRegInfra.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TxRegInfra_1.3.6.tar.gz |
StartedAt: 2019-04-09 04:17:16 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 04:20:39 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 202.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TxRegInfra.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TxRegInfra.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TxRegInfra_1.3.6.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/TxRegInfra.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TxRegInfra/DESCRIPTION’ ... OK * this is package ‘TxRegInfra’ version ‘1.3.6’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TxRegInfra’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'shiny' in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dnmetaApp: no visible global function definition for ‘fluidPage’ dnmetaApp: no visible global function definition for ‘sidebarLayout’ dnmetaApp: no visible global function definition for ‘sidebarPanel’ dnmetaApp: no visible global function definition for ‘helpText’ dnmetaApp: no visible global function definition for ‘radioButtons’ dnmetaApp: no visible global function definition for ‘checkboxGroupInput’ dnmetaApp: no visible global function definition for ‘uiOutput’ dnmetaApp: no visible global function definition for ‘mainPanel’ dnmetaApp: no visible global function definition for ‘dataTableOutput’ dnmetaApp : server: no visible global function definition for ‘renderUI’ dnmetaApp : server: no visible global function definition for ‘selectInput’ dnmetaApp : server: no visible global function definition for ‘renderDataTable’ dnmetaApp: no visible global function definition for ‘runApp’ Undefined global functions or variables: checkboxGroupInput dataTableOutput fluidPage helpText mainPanel radioButtons renderDataTable renderUI runApp selectInput sidebarLayout sidebarPanel uiOutput * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 14 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed txmodels 19.427 2.221 23.875 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/TxRegInfra.Rcheck/00check.log’ for details.
TxRegInfra.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TxRegInfra ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘TxRegInfra’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (TxRegInfra)
TxRegInfra.Rcheck/TxRegInfra-Ex.timings
name | user | system | elapsed | |
URL_txregInAWS | 0 | 0 | 0 | |
basicColData | 0.073 | 0.003 | 0.141 | |
basicFormatter | 0.016 | 0.000 | 0.015 | |
dgf_meta | 0.005 | 0.001 | 0.006 | |
dnmeta | 0.054 | 0.006 | 0.060 | |
dnmetaApp | 0.001 | 0.000 | 0.001 | |
getDocumentFields | 0.001 | 0.001 | 0.001 | |
getFieldNames | 0.094 | 0.010 | 1.713 | |
grConverter | 0.026 | 0.000 | 0.027 | |
importBedToMongo | 0.007 | 0.003 | 0.010 | |
listAllCollections | 0.001 | 0.001 | 0.003 | |
makeAggregator | 0.007 | 0.004 | 0.008 | |
makeColData | 0.002 | 0.003 | 0.007 | |
oldbasicColData | 0.007 | 0.002 | 0.008 | |
ragged41FP | 0.188 | 0.005 | 0.226 | |
sbov | 0.005 | 0.004 | 0.008 | |
txmodels | 19.427 | 2.221 | 23.875 | |
txregCollections | 0.004 | 0.003 | 0.007 | |
verifyHasMongoCmd | 0.001 | 0.000 | 0.001 | |
verifyRunningMongodb | 0.000 | 0.001 | 0.000 | |