Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:41:22 -0400 (Wed, 16 Oct 2019).
Package 1633/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TCGAutils 1.4.0 Marcel Ramos
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: TCGAutils |
Version: 1.4.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TCGAutils_1.4.0.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.4.0.zip && rm TCGAutils_1.4.0.tar.gz TCGAutils_1.4.0.zip |
StartedAt: 2019-10-15 20:25:35 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 20:26:35 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 59.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TCGAutils_1.4.0.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.4.0.zip && rm TCGAutils_1.4.0.tar.gz TCGAutils_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 61386 100 61386 0 0 921k 0 --:--:-- --:--:-- --:--:-- 1033k install for i386 * installing *source* package 'TCGAutils' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TCGAutils' finding HTML links ... done ID-translation html TCGAbarcode html TCGAbiospec html TCGAsampleSelect html finding level-2 HTML links ... done TCGAutils-package html builds html clinicalNames html curatedTCGAData-helpers html diseaseCodes html findGRangesCols html generateMap html getFileName html hidden-helpers html imputeAssay html makeGRangesListFromCopyNumber html makeGRangesListFromExonFiles html makeSummarizedExperimentFromGISTIC html mergeColData html sampleTypes html simplifyTCGA html trimColData html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'TCGAutils' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'TCGAutils' as TCGAutils_1.4.0.zip * DONE (TCGAutils) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'TCGAutils' successfully unpacked and MD5 sums checked