Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:34:13 -0400 (Tue, 09 Apr 2019).
Package 1562/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
StarBioTrek 1.9.1 Claudia Cava
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: StarBioTrek |
Version: 1.9.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:StarBioTrek.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings StarBioTrek_1.9.1.tar.gz |
StartedAt: 2019-04-09 03:57:57 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 04:00:56 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 179.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: StarBioTrek.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:StarBioTrek.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings StarBioTrek_1.9.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/StarBioTrek.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘StarBioTrek/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘StarBioTrek’ version ‘1.9.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘StarBioTrek’ can be installed ... OK * checking installed package size ... NOTE installed size is 9.0Mb sub-directories of 1Mb or more: data 8.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getKEGGdata: no visible binding for global variable ‘Carbohydrate’ getKEGGdata: no visible binding for global variable ‘Energy’ getKEGGdata: no visible binding for global variable ‘Lipid’ getKEGGdata: no visible binding for global variable ‘Aminoacid’ getKEGGdata: no visible binding for global variable ‘Glybio_met’ getKEGGdata: no visible binding for global variable ‘Cofa_vita_met’ getKEGGdata: no visible binding for global variable ‘Transcription’ getKEGGdata: no visible binding for global variable ‘Translation’ getKEGGdata: no visible binding for global variable ‘Folding_sorting_and_degradation’ getKEGGdata: no visible binding for global variable ‘Replication_and_repair’ getKEGGdata: no visible binding for global variable ‘Signal_transduction’ getKEGGdata: no visible binding for global variable ‘Signaling_molecules_and_interaction’ getKEGGdata: no visible binding for global variable ‘Transport_and_catabolism’ getKEGGdata: no visible binding for global variable ‘Cell_growth_and_death’ getKEGGdata: no visible binding for global variable ‘Cellular_community’ getKEGGdata: no visible binding for global variable ‘Immune_system’ getKEGGdata: no visible binding for global variable ‘Endocrine_system’ getKEGGdata: no visible binding for global variable ‘Circulatory_system’ getKEGGdata: no visible binding for global variable ‘Digestive_system’ getKEGGdata: no visible binding for global variable ‘Excretory_system’ getKEGGdata: no visible binding for global variable ‘Nervous_system’ getKEGGdata: no visible binding for global variable ‘Sensory_system’ svm_classification: no visible binding for global variable ‘Target’ Undefined global functions or variables: Aminoacid Carbohydrate Cell_growth_and_death Cellular_community Circulatory_system Cofa_vita_met Digestive_system Endocrine_system Energy Excretory_system Folding_sorting_and_degradation Glybio_met Immune_system Lipid Nervous_system Replication_and_repair Sensory_system Signal_transduction Signaling_molecules_and_interaction Target Transcription Translation Transport_and_catabolism * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed IPPI 19.012 0.474 19.721 getKEGGdata 9.977 0.100 12.494 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/StarBioTrek.Rcheck/00check.log’ for details.
StarBioTrek.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL StarBioTrek ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘StarBioTrek’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (StarBioTrek)
StarBioTrek.Rcheck/StarBioTrek-Ex.timings
name | user | system | elapsed | |
GE_matrix | 0.436 | 0.012 | 0.450 | |
IPPI | 19.012 | 0.474 | 19.721 | |
SelectedSample | 0.111 | 0.024 | 0.138 | |
average | 0.015 | 0.004 | 0.019 | |
ds_score_crtlk | 0.032 | 0.008 | 0.040 | |
euc_dist_crtlk | 0.087 | 0.014 | 0.101 | |
getKEGGdata | 9.977 | 0.100 | 12.494 | |
getNETdata | 2.041 | 0.116 | 3.599 | |
list_path_net | 4.149 | 0.246 | 4.439 | |
matrix_plot | 0.063 | 0.009 | 0.071 | |
path_net | 3.390 | 0.153 | 3.552 | |
plotting_cross_talk | 0.039 | 0.009 | 0.048 | |
st_dv | 0.017 | 0.004 | 0.021 | |
svm_classification | 0.667 | 0.007 | 0.683 | |