Package: SSPA

Version: 2.24.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SSPA_2.24.0.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SSPA_2.24.0.zip && rm SSPA_2.24.0.tar.gz SSPA_2.24.0.zip

StartedAt: 2019-10-15 19:06:23 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:07:04 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 40.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SSPA_2.24.0.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SSPA_2.24.0.zip && rm SSPA_2.24.0.tar.gz SSPA_2.24.0.zip
###
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install for i386

* installing *source* package 'SSPA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
Rinit.c:12:1: warning: missing braces around initializer [-Wmissing-braces]
 };
 ^
Rinit.c:12:1: warning: (near initialization for 'cMethods[2]') [-Wmissing-braces]
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c massdist.c -o massdist.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c nncg.c -o nncg.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def Rinit.o massdist.o nncg.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/SSPA.buildbin-libdir/00LOCK-SSPA/00new/SSPA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SSPA'
    finding HTML links ... done
    Nutrigenomics                           html  
    dbitri                                  html  
    deepSAGE                                html  
    pbitri                                  html  
    pilotData                               html  
    plot-methods                            html  
    predictpower                            html  
    qbitri                                  html  
    rbitri                                  html  
    sampleSize                              html  
    show-methods                            html  
    simdat                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SSPA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
Rinit.c:12:1: warning: missing braces around initializer [-Wmissing-braces]
 };
 ^
Rinit.c:12:1: warning: (near initialization for 'cMethods[2]') [-Wmissing-braces]
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c massdist.c -o massdist.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c nncg.c -o nncg.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def Rinit.o massdist.o nncg.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SSPA' as SSPA_2.24.0.zip
* DONE (SSPA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SSPA' successfully unpacked and MD5 sums checked