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This page was generated on 2019-10-16 12:36:51 -0400 (Wed, 16 Oct 2019).
Package 1527/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SIMLR 1.10.0 Luca De Sano
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SIMLR |
Version: 1.10.0 |
Command: rm -rf SIMLR.buildbin-libdir && mkdir SIMLR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIMLR.buildbin-libdir SIMLR_1.10.0.tar.gz |
StartedAt: 2019-10-16 10:14:06 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 10:15:37 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 90.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: SIMLR_1.10.0.zip |
PackageFileSize: 5.199 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SIMLR.buildbin-libdir && mkdir SIMLR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIMLR.buildbin-libdir SIMLR_1.10.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'SIMLR' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Rtsne.cpp -o Rtsne.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c projsplx_R.c -o projsplx_R.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c sptree.cpp -o sptree.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c tsne.cpp -o tsne.o In file included from tsne.cpp:41:0: vptree.h: In instantiation of 'void VpTree::search(VpTree ::Node*, const T&, int, std::priority_queue ::HeapItem>&) [with T = DataPoint; double (* distance)(const T&, const T&) = precomputed_distance; typename std::vector ::HeapItem, std::allocator ::HeapItem> >::value_type = VpTree ::HeapItem]': vptree.h:131:38: required from 'void VpTree ::search(const T&, int, std::vector *, std::vector *) [with T = DataPoint; double (* distance)(const T&, const T&) = precomputed_distance]' tsne.cpp:472:59: required from here vptree.h:237:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) heap.pop(); // remove furthest node from result list (if we already have k results) ^ In file included from tsne.cpp:41:0: vptree.h:239:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) _tau = heap.top().dist; // update value of tau (farthest point in result list) ^ In file included from tsne.cpp:41:0: vptree.h: In instantiation of 'void VpTree ::search(VpTree ::Node*, const T&, int, std::priority_queue ::HeapItem>&) [with T = DataPoint; double (* distance)(const T&, const T&) = euclidean_distance; typename std::vector ::HeapItem, std::allocator ::HeapItem> >::value_type = VpTree ::HeapItem]': vptree.h:131:38: required from 'void VpTree ::search(const T&, int, std::vector *, std::vector *) [with T = DataPoint; double (* distance)(const T&, const T&) = euclidean_distance]' tsne.cpp:550:59: required from here vptree.h:237:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) heap.pop(); // remove furthest node from result list (if we already have k results) ^ In file included from tsne.cpp:41:0: vptree.h:239:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) _tau = heap.top().dist; // update value of tau (farthest point in result list) ^ C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o SIMLR.dll tmp.def RcppExports.o Rtsne.o projsplx_R.o sptree.o tsne.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/SIMLR.buildbin-libdir/00LOCK-SIMLR/00new/SIMLR/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SIMLR' finding HTML links ... done BuettnerFlorian html CIMLR html CIMLR_Estimate_Number_of_Clusters html SIMLR html SIMLR_Estimate_Number_of_Clusters html SIMLR_Feature_Ranking html SIMLR_Large_Scale html ZeiselAmit html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SIMLR' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Rtsne.cpp -o Rtsne.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c projsplx_R.c -o projsplx_R.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c sptree.cpp -o sptree.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c tsne.cpp -o tsne.o In file included from tsne.cpp:41:0: vptree.h: In instantiation of 'void VpTree ::search(VpTree ::Node*, const T&, int, std::priority_queue ::HeapItem>&) [with T = DataPoint; double (* distance)(const T&, const T&) = precomputed_distance; typename std::vector ::HeapItem, std::allocator ::HeapItem> >::value_type = VpTree ::HeapItem]': vptree.h:131:38: required from 'void VpTree ::search(const T&, int, std::vector *, std::vector *) [with T = DataPoint; double (* distance)(const T&, const T&) = precomputed_distance]' tsne.cpp:472:59: required from here vptree.h:237:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) heap.pop(); // remove furthest node from result list (if we already have k results) ^ In file included from tsne.cpp:41:0: vptree.h:239:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) _tau = heap.top().dist; // update value of tau (farthest point in result list) ^ In file included from tsne.cpp:41:0: vptree.h: In instantiation of 'void VpTree ::search(VpTree ::Node*, const T&, int, std::priority_queue ::HeapItem>&) [with T = DataPoint; double (* distance)(const T&, const T&) = euclidean_distance; typename std::vector ::HeapItem, std::allocator ::HeapItem> >::value_type = VpTree ::HeapItem]': vptree.h:131:38: required from 'void VpTree ::search(const T&, int, std::vector *, std::vector *) [with T = DataPoint; double (* distance)(const T&, const T&) = euclidean_distance]' tsne.cpp:550:59: required from here vptree.h:237:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) heap.pop(); // remove furthest node from result list (if we already have k results) ^ In file included from tsne.cpp:41:0: vptree.h:239:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(heap.size() == k) _tau = heap.top().dist; // update value of tau (farthest point in result list) ^ C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o SIMLR.dll tmp.def RcppExports.o Rtsne.o projsplx_R.o sptree.o tsne.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/SIMLR.buildbin-libdir/SIMLR/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'SIMLR' as SIMLR_1.10.0.zip * DONE (SIMLR)