Package: Ringo

Version: 1.47.0

Command: rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Ringo_1.47.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Ringo.buildbin-libdir

StartedAt: 2019-04-09 06:20:09 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 06:21:08 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 58.8 seconds

RetCode: 0

Status:  OK

PackageFile: Ringo_1.47.0.tgz

PackageFileSize: 2.082 MiB

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### Running command:
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###   rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Ringo_1.47.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Ringo.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Ringo.buildbin-libdir Ringo_1.47.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Ringo’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mmeansd.cpp -o mmeansd.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mmedian.cpp -o mmedian.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c region_overlap.c -o region_overlap.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ringo_init.c -o ringo_init.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Ringo.so mmeansd.o mmedian.o region_overlap.o ringo_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/Ringo.buildbin-libdir/Ringo/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘ls’ from package ‘base’ in package ‘Ringo’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Ringo)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Ringo.buildbin-libdir/Ringo/libs//Ringo.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "Ringo.buildbin-libdir/Ringo/libs//Ringo.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "Ringo.buildbin-libdir/Ringo/libs//Ringo.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "Ringo.buildbin-libdir/Ringo/libs//Ringo.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "Ringo.buildbin-libdir/Ringo/libs//Ringo.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "Ringo.buildbin-libdir/Ringo/libs//Ringo.so"