Mike Smith
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Rhdf5lib |
| Branch: RELEASE_3_9 |
| Last Commit: 11ac306 |
| Last Changed Date: 2019-10-15 03:10:39 -0400 (Tue, 15 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:38:46 -0400 (Wed, 16 Oct 2019).
| Package 1373/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rhdf5lib 1.6.3 Mike Smith
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Rhdf5lib |
| Version: 1.6.3 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Rhdf5lib_1.6.3.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.6.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.6.3.zip && rm Rhdf5lib_1.6.3.tar.gz Rhdf5lib_1.6.3.zip |
| StartedAt: 2019-10-15 18:40:54 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:43:15 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 141.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Rhdf5lib_1.6.3.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.6.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.6.3.zip && rm Rhdf5lib_1.6.3.tar.gz Rhdf5lib_1.6.3.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
31 8758k 31 2752k 0 0 13.0M 0 --:--:-- --:--:-- --:--:-- 13.4M
100 8758k 100 8758k 0 0 27.7M 0 --:--:-- --:--:-- --:--:-- 28.3M
install for i386
* installing *source* package 'Rhdf5lib' ...
** using staged installation
untarring hdf5_headers_1.10.3.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "winlib/i386/libhdf5.a" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5.a"
cp "winlib/i386/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_cpp.a"
cp "winlib/i386/libszip.a" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I./hdf5 -O3 -Wall -std=gnu99 -mtune=generic -c Rhdf5lib.c -o Rhdf5lib.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib/i386/libhdf5.a winlib/i386/libszip.a -lpsapi -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rhdf5lib'
finding HTML links ... done
Rhdf5lib html
getHdf5Version html
pkgconfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.10.3.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp "winlib/x64/libhdf5.a" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a"
cp "winlib/x64/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a"
cp "winlib/x64/libszip.a" "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mtune=generic -c Rhdf5lib.c -o Rhdf5lib.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib/x64/libhdf5.a winlib/x64/libszip.a -lpsapi -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhdf5lib' as Rhdf5lib_1.6.3.zip
* DONE (Rhdf5lib)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Rhdf5lib' successfully unpacked and MD5 sums checked