Multiple platform build/check report for BioC 3.9 - CHECK report for RedeR on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.32.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.32.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output

Example timings

name	user	system	elapsed
RedPort-class	0.006	0.001	0.007
RedPort	0.001	0.000	0.001
RedeR.data	0.485	0.068	0.554
addEdgeBetweenContainers	0.021	0.003	0.023
addEdges	0.009	0.001	0.011
addGraph	0.009	0.002	0.011
addLegend	0.010	0.002	0.011
addNodes	0.010	0.001	0.011
addSeries	0.018	0.002	0.020
addSubgraph	0.010	0.001	0.010
addSubgraph.list	0.016	0.001	0.018
att	0.045	0.006	0.052
calld	0.000	0.000	0.001
cea	0.018	0.004	0.022
deSelectEdges	0.011	0.001	0.013
deSelectGraph	0.029	0.000	0.030
deSelectNodes	0.014	0.001	0.015
deleteEdges	0.015	0.001	0.015
deleteNodes	0.015	0.001	0.016
deleteSelectedEdges	0.015	0.001	0.016
deleteSelectedNodes	0.016	0.001	0.018
duplicateGraph	0.018	0.002	0.019
exitd	0.068	0.001	0.069
getContainerComponets	0.016	0.001	0.017
getEdgeIDs	0.018	0.002	0.020
getEdges	0.016	0.001	0.017
getGraph	0.016	0.001	0.017
getNodeIDs	0.010	0.001	0.010
getNodes	0.012	0.001	0.014
getSourceEdgeIDs	0.016	0.001	0.017
getTargetEdgeIDs	0.016	0.002	0.018
gtoy.rm	0.000	0.000	0.001
isDynamicsActive	0.001	0.001	0.001
mergeNodes	0.023	0.002	0.024
mergeOutEdges	0.017	0.002	0.018
nestNodes	0.016	0.001	0.017
nesthc	1.873	0.180	2.053
ping	0.002	0.001	0.003
relax	0.017	0.004	0.020
resetd	0.001	0.000	0.002
selectAllEdges	0.018	0.003	0.021
selectAllNodes	0.016	0.002	0.018
selectEdges	0.017	0.003	0.021
selectGraph	0.013	0.002	0.016
selectNodes	0.019	0.003	0.021
setArrowDirection	0.017	0.002	0.019
subg	0.056	0.008	0.064
updateContainerSize	0.011	0.002	0.013
updateGraph	0.011	0.002	0.013
version	0.001	0.000	0.001

CHECK report for RedeR on celaya2

Summary

Command output

Installation output

Tests output

Example timings