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This page was generated on 2019-10-16 12:34:01 -0400 (Wed, 16 Oct 2019).
Package 1429/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RTCGA 1.14.0 Marcin Kosinski
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: RTCGA |
Version: 1.14.0 |
Command: rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.14.0.tar.gz |
StartedAt: 2019-10-16 10:07:51 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 10:08:30 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 39.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: RTCGA_1.14.0.zip |
PackageFileSize: 514.8 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.14.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'RTCGA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RTCGA' finding HTML links ... done RTCGA-package html boxplotTCGA html finding level-2 HTML links ... done checkTCGA html convertTCGA html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/convertTCGA.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/convertTCGA.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/convertTCGA.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/convertTCGA.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/convertTCGA.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/convertTCGA.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic datasetsTCGA html downloadTCGA html expressionsTCGA html heatmapTCGA html infoTCGA html installTCGA html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCEBZ4b/R.INSTALL8d4565559ea/RTCGA/man/installTCGA.Rd:16: file link 'install_github' in package 'devtools' does not exist and so has been treated as a topic kmTCGA html mutationsTCGA html pcaTCGA html readTCGA html survivalTCGA html theme_RTCGA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RTCGA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RTCGA' as RTCGA_1.14.0.zip * DONE (RTCGA)