This page was generated on 2018-10-23 02:11:36 -0400 (Tue, 23 Oct 2018).
RNASeqR 0.99.23 Kuan-Hao Chao
Snapshot Date: 2018-10-21 22:32:03 -0400 (Sun, 21 Oct 2018) |
URL: https://git.bioconductor.org/packages/RNASeqR |
Branch: master |
Last Commit: e288d65 |
Last Changed Date: 2018-10-15 14:36:57 -0400 (Mon, 15 Oct 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ![YES, package does not exist in internal repository. YES, package does not exist in internal repository.](../120px-Green_Light_Icon.svg.png) |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |
merida2 | OS X 10.11.6 El Capitan / x86_64 | ERROR | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r RNASeqR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RNASeqR
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* checking for file 'RNASeqR/DESCRIPTION' ... OK
* preparing 'RNASeqR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "RNASeqR_files/figure-html/unnamed-chunk-1-1.png" -trim "RNASeqR_files/figure-html/unnamed-chunk-1-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "RNASeqR_files/figure-html/unnamed-chunk-2-1.png" -trim "RNASeqR_files/figure-html/unnamed-chunk-2-1.png"' execution failed with error code 4
Loading required package: ggplot2
Registered S3 methods overwritten by 'ggplot2':
method from
[.quosures rlang
c.quosures rlang
print.quosures rlang
Registered S3 method overwritten by 'dplyr':
method from
as.data.frame.tbl_df tibble
Loading required package: pathview
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
rowSums, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
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Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.
The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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Loading required package: edgeR
Loading required package: limma
Attaching package: 'limma'
The following object is masked from 'package:BiocGenerics':
plotMA
Registered S3 method overwritten by 'xts':
method from
as.zoo.xts zoo
Registered S3 method overwritten by 'enrichplot':
method from
fortify.enrichResult DOSE
Welcome to RNASeqR
************** Checking input parameters ************
(<U+2714>) : Input parameters are all not NA !!
************** Checking operating system type ************
(<U+2718>) : Your system operating system is windows
This program supports only 'linux' and 'osx'
Quitting from lines 190-197 (RNASeqR.Rmd)
Error: processing vignette 'RNASeqR.Rmd' failed with diagnostics:
Operating system ERROR
Execution halted