Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for PCpheno on tokay2

This page was generated on 2019-10-16 12:21:37 -0400 (Wed, 16 Oct 2019).

Package 1190/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PCpheno 1.46.0
Nolwenn Le Meur
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/PCpheno
Branch: RELEASE_3_9
Last Commit: 5d76c77
Last Changed Date: 2019-05-02 11:53:09 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PCpheno
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PCpheno_1.46.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.46.0.zip && rm PCpheno_1.46.0.tar.gz PCpheno_1.46.0.zip
StartedAt: 2019-10-15 19:55:25 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:56:37 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 71.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PCpheno_1.46.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.46.0.zip && rm PCpheno_1.46.0.tar.gz PCpheno_1.46.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  810k  100  810k    0     0  11.8M      0 --:--:-- --:--:-- --:--:-- 13.1M

install for i386

* installing *source* package 'PCpheno' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
  converting help for package 'PCpheno'
    finding HTML links ... done
    CoHyperGParams-class                    html  
    CoHyperGResult-class                    html  
    Dudley                                  html  
    Giaever                                 html  
    HI                                      html  
    KEGG2SCISI                              html  
    Kastenmayer                             html  
    Lesage                                  html  
    Osterberg                               html  
    PCpheno.package                         html  
    SGDphenoL                               html  
    YEASTOHNOLOG                            html  
    buildFDMat                              html  
    categoryToEntrezBuilder                 html  
    complexStatus                           html  
    deResult-class                          html  
    densityEstimate                         html  
    getDescr                                html  
    getFDgene                               html  
    graphTheory                             html  
    gtResult-class                          html  
    overlap                                 html  
    plot                                    html  
    ppiInteraction                          html  
    reduceM                                 html  
    testResult-class                        html  
    truncName                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PCpheno' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
* MD5 sums
packaged installation of 'PCpheno' as PCpheno_1.46.0.zip
* DONE (PCpheno)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'PCpheno' successfully unpacked and MD5 sums checked