Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:21:37 -0400 (Wed, 16 Oct 2019).
Package 1190/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PCpheno 1.46.0 Nolwenn Le Meur
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: PCpheno |
Version: 1.46.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PCpheno_1.46.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.46.0.zip && rm PCpheno_1.46.0.tar.gz PCpheno_1.46.0.zip |
StartedAt: 2019-10-15 19:55:25 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 19:56:37 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 71.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PCpheno_1.46.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.46.0.zip && rm PCpheno_1.46.0.tar.gz PCpheno_1.46.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 810k 100 810k 0 0 11.8M 0 --:--:-- --:--:-- --:--:-- 13.1M install for i386 * installing *source* package 'PCpheno' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI' ** help *** installing help indices converting help for package 'PCpheno' finding HTML links ... done CoHyperGParams-class html CoHyperGResult-class html Dudley html Giaever html HI html KEGG2SCISI html Kastenmayer html Lesage html Osterberg html PCpheno.package html SGDphenoL html YEASTOHNOLOG html buildFDMat html categoryToEntrezBuilder html complexStatus html deResult-class html densityEstimate html getDescr html getFDgene html graphTheory html gtResult-class html overlap html plot html ppiInteraction html reduceM html testResult-class html truncName html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI' ** testing if installed package can be loaded from final location No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PCpheno' ... ** testing if installed package can be loaded No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI' * MD5 sums packaged installation of 'PCpheno' as PCpheno_1.46.0.zip * DONE (PCpheno) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'PCpheno' successfully unpacked and MD5 sums checked