Claudio Isella
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Mulcom |
| Branch: RELEASE_3_9 |
| Last Commit: f95b4a7 |
| Last Changed Date: 2019-09-12 07:54:14 -0400 (Thu, 12 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:24:12 -0400 (Wed, 16 Oct 2019).
| Package 1063/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Mulcom 1.34.1 Claudio Isella
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: Mulcom |
| Version: 1.34.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Mulcom_1.34.1.tar.gz && rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mulcom.buildbin-libdir Mulcom_1.34.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Mulcom_1.34.1.zip && rm Mulcom_1.34.1.tar.gz Mulcom_1.34.1.zip |
| StartedAt: 2019-10-15 18:49:38 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:50:24 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 46.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Mulcom_1.34.1.tar.gz && rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mulcom.buildbin-libdir Mulcom_1.34.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Mulcom_1.34.1.zip && rm Mulcom_1.34.1.tar.gz Mulcom_1.34.1.zip
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install for i386
* installing *source* package 'Mulcom' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
current_cluster ;
^
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( int i = 0 ; i < sss2.size() ; i++ ) {
^
mulLibs.cc:1023:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Mulcom.buildbin-libdir/00LOCK-Mulcom/00new/Mulcom/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Mulcom'
finding HTML links ... done
Affy html
AffyIlmn html
Illumina html
Ilmn html
MULCOM-class html
MULCOM_P html
harmonicMean html
limmaAffySymbols html
limmaIlmnSymbols html
mulCAND html
mulCalc html
mulDELTA html
mulDiff html
mulFSG html
mulIndex html
mulInt html
mulMSE html
mulOpt html
mulOptPars html
mulOptPlot html
mulParOpt html
mulPerm html
mulPermC html
mulSSE html
mulScores html
mulcomGeneListIlmn html
samAffySymbols html
samIlmnSymbols html
samOptPars html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Mulcom' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
current_cluster ;
^
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( int i = 0 ; i < sss2.size() ; i++ ) {
^
mulLibs.cc:1023:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Mulcom' as Mulcom_1.34.1.zip
* DONE (Mulcom)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Mulcom' successfully unpacked and MD5 sums checked