Andrew McDavid
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MAST |
| Branch: RELEASE_3_9 |
| Last Commit: 7223e4f |
| Last Changed Date: 2019-05-02 11:54:04 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:36:59 -0400 (Wed, 16 Oct 2019).
| Package 924/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MAST 1.10.0 Andrew McDavid
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MAST |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MAST_1.10.0.tar.gz && rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MAST_1.10.0.zip && rm MAST_1.10.0.tar.gz MAST_1.10.0.zip |
| StartedAt: 2019-10-15 20:38:32 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:40:13 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 100.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MAST_1.10.0.tar.gz && rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MAST_1.10.0.zip && rm MAST_1.10.0.tar.gz MAST_1.10.0.zip
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install for i386
* installing *source* package 'MAST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MAST'
finding HTML links ... done
BayesGLMlike-class html
CovFromBoots html
Drop html
FromFlatDF html
FromMatrix html
GLMlike-class html
GSEATests-class html
Hypothesis html
LMERlike-class html
LMlike-class html
LRT html
MAST-package html
SceToSingleCellAssay html
ZlmFit-class html
applyFlat html
bootVcov1 html
cData html
finding level-2 HTML links ... done
calcZ html
colData-set-SingleCellAssay-DataFrame-method
html
collectResiduals html
computeEtFromCt html
convertMASTClassicToSingleCellAssay html
defaultAssay html
defaultPrior html
dof html
ebayes html
expavg html
fData-methods html
featureData-methods html
filterLowExpressedGenes html
fit html
freq html
getConcordance html
getwellKey html
gseaAfterBoot html
hushWarning html
impute html
influence.bayesglm html
invlogit html
logFC html
logmean html
lrTest-ZlmFit-character-method html
lrTest html
maits-dataset html
mast_filter html
melt.SingleCellAssay html
model.matrix-set html
model.matrix html
myBiplot html
pbootVcov1 html
plot.thresholdSCRNACountMatrix html
plotSCAConcordance html
plotlrt html
predict.ZlmFit html
predicted_sig-dataset html
primerAverage html
print.summaryZlmFit html
read.fluidigm html
removeResponse html
rstandard.bayesglm html
se.coef html
show html
split-SingleCellAssay-character-method
html
stat_ell html
subset-SingleCellAssay-method html
summarize html
summary-GSEATests-method html
summary-ZlmFit-method html
summary.thresholdSCRNACountMatrix html
thresholdSCRNACountMatrix html
vbeta-dataset html
vbetaFA-dataset html
waldTest-ZlmFit-matrix-method html
waldTest html
xform html
zlm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MAST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MAST' as MAST_1.10.0.zip
* DONE (MAST)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MAST' successfully unpacked and MD5 sums checked