Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:26:38 -0400 (Wed, 16 Oct 2019).
Package 857/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
KEGGprofile 1.26.0 Shilin Zhao
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: KEGGprofile |
Version: 1.26.0 |
Command: chmod a+r KEGGprofile -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data KEGGprofile |
StartedAt: 2019-10-15 22:21:29 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 22:21:57 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 28.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r KEGGprofile -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data KEGGprofile ### ############################################################################## ############################################################################## * checking for file 'KEGGprofile/DESCRIPTION' ... OK * preparing 'KEGGprofile': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'KEGGprofile.Rnw' using Sweave Loading required package: RCurl Loading required package: bitops KEGG.db contains mappings based on older data because the original resource was removed from the the public domain before the most recent update was produced. This package should now be considered deprecated and future versions of Bioconductor may not have it available. Users who want more current data are encouraged to look at the KEGGREST or reactome.db packages Error: processing vignette 'KEGGprofile.Rnw' failed with diagnostics: chunk 2 (label = convertIdExample) Error in getBM(attributes = attributes, filters = filters, values = oldId, : Invalid attribute(s): entrezgene Please use the function 'listAttributes' to get valid attribute names --- failed re-building 'KEGGprofile.Rnw' SUMMARY: processing the following file failed: 'KEGGprofile.Rnw' Error: Vignette re-building failed. Execution halted