Back to Multiple platform build/check report for BioC 3.9
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

INSTALL report for IWTomics on tokay2

This page was generated on 2019-10-16 12:37:21 -0400 (Wed, 16 Oct 2019).

Package 848/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IWTomics 1.8.0
Marzia A Cremona
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/IWTomics
Branch: RELEASE_3_9
Last Commit: 843eb9d
Last Changed Date: 2019-05-02 11:54:04 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: IWTomics
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/IWTomics_1.8.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.8.0.zip && rm IWTomics_1.8.0.tar.gz IWTomics_1.8.0.zip
StartedAt: 2019-10-15 19:58:16 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:59:29 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 73.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/IWTomics_1.8.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.8.0.zip && rm IWTomics_1.8.0.tar.gz IWTomics_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  682k  100  682k    0     0  9957k      0 --:--:-- --:--:-- --:--:-- 10.9M

install for i386

* installing *source* package 'IWTomics' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'smooth' in package 'IWTomics'
** help
*** installing help indices
  converting help for package 'IWTomics'
    finding HTML links ... done
    ETn_example                             html  
    IWTomics-internal                       html  
    IWTomics-package                        html  
    IWTomicsData-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsData-class.Rd:60: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsData-class.Rd:135: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsData-class.Rd:168: file link 'read.delim' in package 'utils' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsData-class.Rd:308: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsData-class.Rd:309: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
    IWTomicsTest                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsTest.Rd:61: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsTest.Rd:64: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsTest.Rd:79: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/IWTomicsTest.Rd:80: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
    features_example                        html  
    plot-IWTomicsData                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/plot-IWTomicsData.Rd:96: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
    plotSummary                             html  
    plotTest                                html  
    regionsFeatures_center                  html  
    regionsFeatures_scale                   html  
    regions_example                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/regions_example.Rd:19: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/regions_example.Rd:15: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    smooth-IWTomicsData                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYp1toC/R.INSTALL1eb07d5755c5/IWTomics/man/smooth-IWTomicsData.Rd:78: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IWTomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IWTomics' as IWTomics_1.8.0.zip
* DONE (IWTomics)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'IWTomics' successfully unpacked and MD5 sums checked