Zuguang Gu
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/HilbertCurve |
| Branch: RELEASE_3_9 |
| Last Commit: 8a9aa6b |
| Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:56:07 -0400 (Wed, 16 Oct 2019).
| Package 758/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HilbertCurve 1.14.0 Zuguang Gu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: HilbertCurve |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.14.0.tar.gz |
| StartedAt: 2019-10-16 03:38:46 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:42:45 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 239.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HilbertCurve.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.14.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 23.014 1.521 25.776
hc_layer-GenomicHilbertCurve-method 16.108 0.563 16.801
GenomicHilbertCurve 13.822 0.317 15.826
hc_png-HilbertCurve-method 7.481 0.462 7.955
hc_map-GenomicHilbertCurve-method 6.694 0.132 7.033
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘HilbertCurve’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘HilbertCurve.Rmd’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
>
> test_check("HilbertCurve")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 8 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
6.031 0.656 6.662
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
| name | user | system | elapsed | |
| GenomicHilbertCurve-class | 0.000 | 0.000 | 0.002 | |
| GenomicHilbertCurve | 13.822 | 0.317 | 15.826 | |
| HilbertCurve-class | 0 | 0 | 0 | |
| HilbertCurve | 0.694 | 0.045 | 0.741 | |
| default_overlay | 0.001 | 0.001 | 0.001 | |
| hc_centered_text-HilbertCurve-method | 0.159 | 0.002 | 0.162 | |
| hc_layer-GenomicHilbertCurve-method | 16.108 | 0.563 | 16.801 | |
| hc_layer-HilbertCurve-method | 23.014 | 1.521 | 25.776 | |
| hc_layer-dispatch | 0 | 0 | 0 | |
| hc_level-HilbertCurve-method | 0.049 | 0.005 | 0.059 | |
| hc_map-GenomicHilbertCurve-method | 6.694 | 0.132 | 7.033 | |
| hc_normal_points-HilbertCurve-method | 0.000 | 0.001 | 0.001 | |
| hc_offset-HilbertCurve-method | 0.017 | 0.001 | 0.018 | |
| hc_png-HilbertCurve-method | 7.481 | 0.462 | 7.955 | |
| hc_points-GenomicHilbertCurve-method | 0.700 | 0.020 | 0.721 | |
| hc_points-HilbertCurve-method | 1.056 | 0.014 | 1.072 | |
| hc_points-dispatch | 0 | 0 | 0 | |
| hc_polygon-GenomicHilbertCurve-method | 0.831 | 0.031 | 0.996 | |
| hc_polygon-HilbertCurve-method | 0.210 | 0.010 | 0.239 | |
| hc_polygon-dispatch | 0.001 | 0.000 | 0.000 | |
| hc_rect-GenomicHilbertCurve-method | 0.479 | 0.009 | 0.489 | |
| hc_rect-HilbertCurve-method | 0.111 | 0.005 | 0.116 | |
| hc_rect-dispatch | 0.000 | 0.001 | 0.001 | |
| hc_segmented_points-HilbertCurve-method | 0.001 | 0.001 | 0.000 | |
| hc_segments-GenomicHilbertCurve-method | 0.891 | 0.018 | 0.909 | |
| hc_segments-HilbertCurve-method | 0.113 | 0.004 | 0.118 | |
| hc_segments-dispatch | 0 | 0 | 0 | |
| hc_text-GenomicHilbertCurve-method | 0.327 | 0.008 | 0.335 | |
| hc_text-HilbertCurve-method | 0.139 | 0.007 | 0.146 | |
| hc_text-dispatch | 0.000 | 0.000 | 0.001 | |
| is_white | 0 | 0 | 0 | |
| show-HilbertCurve-method | 0.016 | 0.001 | 0.018 | |
| unzoom-HilbertCurve-method | 0.014 | 0.001 | 0.017 | |
| zoom-HilbertCurve-method | 0.014 | 0.001 | 0.016 | |