Package: HIBAG

Version: 1.20.0

Command: rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HIBAG.buildbin-libdir HIBAG_1.20.0.tar.gz

StartedAt: 2019-10-16 09:25:30 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 09:26:11 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 41.5 seconds

RetCode: 0

Status:  OK

PackageFile: HIBAG_1.20.0.zip

PackageFileSize: 1.683 MiB

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### Running command:
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###   rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HIBAG.buildbin-libdir HIBAG_1.20.0.tar.gz
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install for i386

* installing *source* package 'HIBAG' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c HIBAG.cpp -o HIBAG.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c LibHLA.cpp -o LibHLA.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o HIBAG.dll tmp.def HIBAG.o LibHLA.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/HIBAG.buildbin-libdir/00LOCK-HIBAG/00new/HIBAG/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HIBAG'
    finding HTML links ... done
    HIBAG-package                           html  
    HLA_Type_Table                          html  
    HapMap_CEU_Geno                         html  
    hlaAASeqClass                           html  
    hlaAllele                               html  
    hlaAlleleClass                          html  
    hlaAlleleDigit                          html  
    hlaAlleleSubset                         html  
    hlaAssocTest                            html  
    hlaAttrBagClass                         html  
    hlaAttrBagObj                           html  
    hlaAttrBagging                          html  
    hlaBED2Geno                             html  
    hlaCheckAllele                          html  
    hlaCheckSNPs                            html  
    hlaClose                                html  
    hlaCombineAllele                        html  
    hlaCombineModelObj                      html  
    hlaCompareAllele                        html  
    hlaConvSequence                         html  
    hlaDistance                             html  
    hlaErrMsg                               html  
    hlaFlankingSNP                          html  
    hlaGDS2Geno                             html  
    hlaGeno2PED                             html  
    hlaGenoAFreq                            html  
    hlaGenoCombine                          html  
    hlaGenoLD                               html  
    hlaGenoMFreq                            html  
    hlaGenoMRate                            html  
    hlaGenoMRate_Samp                       html  
    hlaGenoSubset                           html  
    hlaGenoSwitchStrand                     html  
    hlaLDMatrix                             html  
    hlaLociInfo                             html  
    hlaMakeSNPGeno                          html  
    hlaModelFiles                           html  
    hlaModelFromObj                         html  
    hlaOutOfBag                             html  
    hlaParallelAttrBagging                  html  
    hlaPredMerge                            html  
    hlaPublish                              html  
    hlaReport                               html  
    hlaReportPlot                           html  
    hlaSNPGenoClass                         html  
    hlaSNPID                                html  
    hlaSampleAllele                         html  
    hlaSplitAllele                          html  
    hlaSubModelObj                          html  
    hlaUniqueAllele                         html  
    plot.hlaAttrBagObj                      html  
    predict.hlaAttrBagClass                 html  
    print.hlaAttrBagClass                   html  
    summary.hlaAlleleClass                  html  
    summary.hlaSNPGenoClass                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HIBAG' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c HIBAG.cpp -o HIBAG.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c LibHLA.cpp -o LibHLA.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o HIBAG.dll tmp.def HIBAG.o LibHLA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/HIBAG.buildbin-libdir/HIBAG/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HIBAG' as HIBAG_1.20.0.zip
* DONE (HIBAG)