Back to Multiple platform build/check report for BioC 3.9
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

BUILD BIN report for GoogleGenomics on tokay2

This page was generated on 2018-10-29 10:29:59 -0400 (Mon, 29 Oct 2018).

Package 660/1642HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GoogleGenomics 2.3.2
Siddhartha Bagaria
Snapshot Date: 2018-10-28 16:46:29 -0400 (Sun, 28 Oct 2018)
URL: https://git.bioconductor.org/packages/GoogleGenomics
Branch: master
Last Commit: f58dcd3
Last Changed Date: 2018-08-03 09:09:20 -0400 (Fri, 03 Aug 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GoogleGenomics
Version: 2.3.2
Command: rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.3.2.tar.gz
StartedAt: 2018-10-29 08:57:00 -0400 (Mon, 29 Oct 2018)
EndedAt: 2018-10-29 08:57:50 -0400 (Mon, 29 Oct 2018)
EllapsedTime: 49.9 seconds
RetCode: 0
Status:  OK  
PackageFile: GoogleGenomics_2.3.2.zip
PackageFileSize: 826.6 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.3.2.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'GoogleGenomics' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cc -o init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GoogleGenomics.dll tmp.def init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GoogleGenomics'
    finding HTML links ... done
    GoogleGenomics                          html  
    authenticate                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6NcIrw/R.INSTALL26f41ae1169f/GoogleGenomics/man/authenticate.Rd:24: file link 'httpuv' in package 'httpuv' does not exist and so has been treated as a topic
    callGRPCMethod                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6NcIrw/R.INSTALL26f41ae1169f/GoogleGenomics/man/callGRPCMethod.Rd:15: file link 'RProtoBuf' in package 'RProtoBuf' does not exist and so has been treated as a topic
    defaultGcloudCredsPath                  html  
    getRProtoBufDefaultObject               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6NcIrw/R.INSTALL26f41ae1169f/GoogleGenomics/man/getRProtoBufDefaultObject.Rd:6: file link 'RProtoBuf' in package 'RProtoBuf' does not exist and so has been treated as a topic
    getReads                                html  
    getReadsPage                            html  
    getSearchPage                           html  
    getVariantCalls                         html  
    getVariants                             html  
    getVariantsPage                         html  
    isGRPCAvailable                         html  
    readsToGAlignments                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6NcIrw/R.INSTALL26f41ae1169f/GoogleGenomics/man/readsToGAlignments.Rd:18: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
    variantsToGRanges                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6NcIrw/R.INSTALL26f41ae1169f/GoogleGenomics/man/variantsToGRanges.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    variantsToVRanges                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6NcIrw/R.INSTALL26f41ae1169f/GoogleGenomics/man/variantsToVRanges.Rd:18: file link 'VRanges' in package 'VariantAnnotation' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
Configured public API key.
Warning: Package 'GoogleGenomics' is deprecated and will be removed from
  Bioconductor version 3.9
In R CMD INSTALL

install for x64

* installing *source* package 'GoogleGenomics' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cc -o init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GoogleGenomics.dll tmp.def init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs/x64
** testing if installed package can be loaded
Configured public API key.
Warning: Package 'GoogleGenomics' is deprecated and will be removed from
  Bioconductor version 3.9
* MD5 sums
packaged installation of 'GoogleGenomics' as GoogleGenomics_2.3.2.zip
* DONE (GoogleGenomics)
In R CMD INSTALL
In R CMD INSTALL