Shijia Zhu
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/GIGSEA |
| Branch: RELEASE_3_9 |
| Last Commit: 91bc1cd |
| Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:41:40 -0400 (Wed, 16 Oct 2019).
| Package 679/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GIGSEA 1.2.0 Shijia Zhu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GIGSEA |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GIGSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings GIGSEA_1.2.0.tar.gz |
| StartedAt: 2019-10-16 04:04:21 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:07:49 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 207.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GIGSEA.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GIGSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings GIGSEA_1.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/GIGSEA.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GIGSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GIGSEA' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GIGSEA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
geneSet2Net 21.59 3.53 25.13
geneSet2sparseMatrix 19.35 3.36 22.73
gmt2geneSet 16.87 4.00 20.89
permutationMultipleLmMatrix 7.08 0.19 7.27
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
geneSet2Net 14.55 3.00 17.59
geneSet2sparseMatrix 14.00 3.53 17.55
gmt2geneSet 8.83 3.05 11.91
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
GIGSEA.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GIGSEA_1.2.0.tar.gz && rm -rf GIGSEA.buildbin-libdir && mkdir GIGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GIGSEA.buildbin-libdir GIGSEA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GIGSEA_1.2.0.zip && rm GIGSEA_1.2.0.tar.gz GIGSEA_1.2.0.zip
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install for i386
* installing *source* package 'GIGSEA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GIGSEA'
finding HTML links ... done
MSigDB.KEGG.Pathway html
MSigDB.TF html
MSigDB.miRNA html
TargetScan.miRNA html
dataFrame2geneSet html
geneSet2Net html
geneSet2sparseMatrix html
gmt2geneSet html
heart.metaXcan html
matrixPval html
orderedIntersect html
permutationMultipleLm html
permutationMultipleLmMatrix html
permutationSimpleLm html
permutationSimpleLmMatrix html
runGIGSEA html
weightedGSEA html
weightedMultipleLm html
weightedPearsonCorr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GIGSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GIGSEA' as GIGSEA_1.2.0.zip
* DONE (GIGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GIGSEA' successfully unpacked and MD5 sums checked
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GIGSEA.Rcheck/examples_i386/GIGSEA-Ex.timings
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GIGSEA.Rcheck/examples_x64/GIGSEA-Ex.timings
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