Package: GENIE3

Version: 1.6.0

Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENIE3_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENIE3.buildbin-libdir

StartedAt: 2019-10-16 08:39:48 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:40:08 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 20.1 seconds

RetCode: 0

Status:  OK

PackageFile: GENIE3_1.6.0.tgz

PackageFileSize: 260 KiB

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### Running command:
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###   rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENIE3_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENIE3.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GENIE3.buildbin-libdir GENIE3_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GENIE3’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c GENIE3.c -o GENIE3.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GENIE3.so GENIE3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘GENIE3’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘GENIE3’ with signature ‘"ExpressionSet"’: no definition for class “ExpressionSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GENIE3)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GENIE3.buildbin-libdir/GENIE3/libs//GENIE3.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "GENIE3.buildbin-libdir/GENIE3/libs//GENIE3.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GENIE3.buildbin-libdir/GENIE3/libs//GENIE3.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "GENIE3.buildbin-libdir/GENIE3/libs//GENIE3.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "GENIE3.buildbin-libdir/GENIE3/libs//GENIE3.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GENIE3.buildbin-libdir/GENIE3/libs//GENIE3.so"