Package: EBcoexpress

Version: 1.28.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EBcoexpress_1.28.0.tar.gz && rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBcoexpress.buildbin-libdir EBcoexpress_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.28.0.zip && rm EBcoexpress_1.28.0.tar.gz EBcoexpress_1.28.0.zip

StartedAt: 2019-10-15 18:59:20 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:00:24 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 63.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/EBcoexpress_1.28.0.tar.gz && rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBcoexpress.buildbin-libdir EBcoexpress_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.28.0.zip && rm EBcoexpress_1.28.0.tar.gz EBcoexpress_1.28.0.zip
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install for i386

* installing *source* package 'EBcoexpress' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c EBcoexpress.c -o EBcoexpress.o
EBcoexpress.c: In function 'bwmcCworker':
EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
       if(temp < -1 | temp > 1)
               ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/EBcoexpress.buildbin-libdir/00LOCK-EBcoexpress/00new/EBcoexpress/libs/i386
** R
** data
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EBcoexpress'
    finding HTML links ... done
    ebCoexpressMeta                         html  
    ebCoexpressSeries                       html  
    fiftyGenes                              html  
    initializeHP                            html  
    makeMyD                                 html  
    priorDiagnostic                         html  
    rankMyGenes                             html  
    showNetwork                             html  
    showPair                                html  
    utilities                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EBcoexpress' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c EBcoexpress.c -o EBcoexpress.o
EBcoexpress.c: In function 'bwmcCworker':
EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
       if(temp < -1 | temp > 1)
               ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/EBcoexpress.buildbin-libdir/EBcoexpress/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBcoexpress' as EBcoexpress_1.28.0.zip
* DONE (EBcoexpress)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'EBcoexpress' successfully unpacked and MD5 sums checked