Simon Anders
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/DESeq |
| Branch: RELEASE_3_9 |
| Last Commit: db4af67 |
| Last Changed Date: 2019-05-02 11:53:13 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:23:12 -0400 (Wed, 16 Oct 2019).
| Package 423/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DESeq 1.36.0 Simon Anders
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DESeq |
| Version: 1.36.0 |
| Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DESeq.buildbin-libdir DESeq_1.36.0.tar.gz |
| StartedAt: 2019-10-16 09:03:58 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 09:04:31 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 33.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DESeq_1.36.0.zip |
| PackageFileSize: 1.458 MiB |
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### Running command:
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### rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DESeq.buildbin-libdir DESeq_1.36.0.tar.gz
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install for i386
* installing *source* package 'DESeq' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DESeq.buildbin-libdir/00LOCK-DESeq/00new/DESeq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DESeq'
finding HTML links ... done
CountDataSet-class html
adjustScvForBias html
conditions html
counts html
dispTable html
estimateDispersions html
estimateSizeFactors html
estimateSizeFactorsForMatrix html
estimateVarianceFunctions html
fitInfo html
fitNbinomGLMs html
fitNbinomGLMsForMatrix html
getBaseMeansAndVariances html
getVarianceStabilizedData html
makeExampleCountDataSet html
nbinomGLMTest html
nbinomTest html
nbinomTestForMatrices html
nbkd.sf html
newCountDataSet html
newCountDataSetFromHTSeqCount html
plotDispEsts html
plotMA html
plotPCA html
residualsEcdfPlot html
scvPlot html
sizeFactors html
varianceFitDiagnostics html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DESeq' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DESeq' as DESeq_1.36.0.zip
* DONE (DESeq)