Brad Nelms
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/CellMapper |
| Branch: RELEASE_3_9 |
| Last Commit: 9287905 |
| Last Changed Date: 2019-05-02 11:54:03 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:36:28 -0400 (Wed, 16 Oct 2019).
| Package 230/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CellMapper 1.10.0 Brad Nelms
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CellMapper |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CellMapper_1.10.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.10.0.zip && rm CellMapper_1.10.0.tar.gz CellMapper_1.10.0.zip |
| StartedAt: 2019-10-15 18:49:52 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:50:30 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 37.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CellMapper_1.10.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.10.0.zip && rm CellMapper_1.10.0.tar.gz CellMapper_1.10.0.zip
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install for i386
* installing *source* package 'CellMapper' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
** help
*** installing help indices
converting help for package 'CellMapper'
finding HTML links ... done
CMprep html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/CMprep.Rd:51: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/CMprep.Rd:52: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
CMsearch html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/CMsearch.Rd:74: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
CellMapperList-class html
ExampleGeneLists html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/ExampleGeneLists.Rd:51: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/ExampleGeneLists.Rd:52: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
ReplicateManuscript html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/ReplicateManuscript.Rd:33: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp2XX2G5/R.INSTALLf88797c3c2c/CellMapper/man/ReplicateManuscript.Rd:34: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CellMapper' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
* MD5 sums
packaged installation of 'CellMapper' as CellMapper_1.10.0.zip
* DONE (CellMapper)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CellMapper' successfully unpacked and MD5 sums checked