Kylie A. Bemis
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Cardinal |
| Branch: RELEASE_3_9 |
| Last Commit: 66fed1d |
| Last Changed Date: 2019-05-22 16:53:28 -0400 (Wed, 22 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:54:55 -0400 (Wed, 16 Oct 2019).
| Package 212/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Cardinal 2.2.6 Kylie A. Bemis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: Cardinal |
| Version: 2.2.6 |
| Command: rm -rf Cardinal.buildbin-libdir && mkdir Cardinal.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Cardinal_2.2.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Cardinal.buildbin-libdir |
| StartedAt: 2019-10-16 08:17:00 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 08:18:08 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 68.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Cardinal_2.2.6.tgz |
| PackageFileSize: 7.139 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Cardinal.buildbin-libdir && mkdir Cardinal.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Cardinal_2.2.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Cardinal.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Cardinal.buildbin-libdir Cardinal_2.2.6.tar.gz' >>>>>>> * installing *source* package ‘Cardinal’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c DIP.cpp -o DIP.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dynAlign.cpp -o dynAlign.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c imzML.cpp -o imzML.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c localMaxima.cpp -o localMaxima.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pugixml.cpp -o pugixml.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c spatial.cpp -o spatial.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c utils.cpp -o utils.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Cardinal.so DIP.o dynAlign.o imzML.o init.o localMaxima.o pugixml.o spatial.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/Cardinal.buildbin-libdir/00LOCK-Cardinal/00new/Cardinal/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘filter’ in package ‘Cardinal’ Creating a new generic function for ‘group_by’ in package ‘Cardinal’ Creating a new generic function for ‘slice’ in package ‘Cardinal’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Cardinal) >>>>>>> >>>>>>> FIXING LINKS FOR Cardinal.buildbin-libdir/Cardinal/libs//Cardinal.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "Cardinal.buildbin-libdir/Cardinal/libs//Cardinal.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "Cardinal.buildbin-libdir/Cardinal/libs//Cardinal.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "Cardinal.buildbin-libdir/Cardinal/libs//Cardinal.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "Cardinal.buildbin-libdir/Cardinal/libs//Cardinal.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "Cardinal.buildbin-libdir/Cardinal/libs//Cardinal.so"