| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:07:52 -0400 (Wed, 16 Oct 2019).
| Package 166/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BioQC 1.12.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: BioQC |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL BioQC |
| StartedAt: 2019-10-15 18:12:44 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:13:08 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 23.7 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL BioQC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘BioQC’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fpic -g -O2 -Wall -c gini.c -o gini.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fpic -g -O2 -Wall -c read_gmt.cpp -o read_gmt.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fpic -g -O2 -Wall -c stat_rank.c -o stat_rank.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fpic -g -O2 -Wall -c wmw_test.c -o wmw_test.o wmw_test.c: In function ‘wmw_test_list’: wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for wmw_test.c: In function ‘wmw_test’: wmw_test.c:155:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for wmw_test.c: In function ‘signed_wmw_test_list’: wmw_test.c:188:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for wmw_test.c: In function ‘signed_wmw_test’: wmw_test.c:257:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-BioQC/00new/BioQC/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help Warning: /home/biocbuild/bbs-3.9-bioc/meat/BioQC/man/IndexList.Rd:6: All text must be in a section Warning: /home/biocbuild/bbs-3.9-bioc/meat/BioQC/man/IndexList.Rd:7: All text must be in a section Warning: /home/biocbuild/bbs-3.9-bioc/meat/BioQC/man/IndexList.Rd:9: All text must be in a section *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BioQC)