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INSTALL report for ArrayExpressHTS on merida2

This page was generated on 2019-04-09 13:25:50 -0400 (Tue, 09 Apr 2019).

Package 73/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ArrayExpressHTS 1.33.1
Angela Goncalves , Andrew Tikhonov
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/ArrayExpressHTS
Branch: master
Last Commit: 0db10b7
Last Changed Date: 2019-01-04 13:08:26 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 ...NOT SUPPORTED...
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64 [ ERROR ] ERROR  skipped  skipped 

Summary

Package: ArrayExpressHTS
Version: 1.33.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ArrayExpressHTS
StartedAt: 2019-04-08 19:01:28 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:02:17 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 48.6 seconds
RetCode: 1
Status:  ERROR 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ArrayExpressHTS
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘ArrayExpressHTS’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rsamtools/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c addXS.c -o addXS.o
addXS.c:42:5: warning: implicit declaration of function 'Rprintf' is invalid in C99 [-Wimplicit-function-declaration]
    Rprintf("What?\n");
    ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rsamtools/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c fltbam.c -o fltbam.o
fltbam.c:2:10: fatal error: 'samtools/sam.h' file not found
#include "samtools/sam.h"
         ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
1 error generated.
make: *** [fltbam.o] Error 1
ERROR: compilation failed for package ‘ArrayExpressHTS’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/ArrayExpressHTS’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/ArrayExpressHTS’