Elika Garg
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/sights |
| Branch: master |
| Last Commit: cc570f2 |
| Last Changed Date: 2019-01-04 13:50:28 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:46:17 -0400 (Tue, 09 Apr 2019).
| Package 1487/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sights 1.9.1 Elika Garg
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: sights |
| Version: 1.9.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:sights.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings sights_1.9.1.tar.gz |
| StartedAt: 2019-04-09 03:39:23 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 03:41:05 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 101.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sights.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:sights.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings sights_1.9.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/sights.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘sights/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sights’ version ‘1.9.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sights’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
sights.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL sights ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘sights’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sights)
sights.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(sights)
> test_check("sights")
alpha= 2.527861 beta= 2.054019
alpha= 2.162155 beta= 2.810248
alpha= 2.162155 beta= 2.810248
alpha= 2.162155 beta= 2.810248
══ testthat results ═══════════════════════════════════════════════════════════
OK: 78 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
52.874 0.157 53.126
sights.Rcheck/sights-Ex.timings
| name | user | system | elapsed | |
| ex_dataMatrix | 0.032 | 0.000 | 0.032 | |
| inglese | 0.074 | 0.007 | 0.081 | |
| normLoess | 0.221 | 0.008 | 0.229 | |
| normMedFil | 0.167 | 0.000 | 0.167 | |
| normR | 0.049 | 0.000 | 0.049 | |
| normRobZ | 0.004 | 0.000 | 0.005 | |
| normSPAWN | 0.059 | 0.000 | 0.059 | |
| normSights | 0.005 | 0.000 | 0.005 | |
| normZ | 0.004 | 0.000 | 0.003 | |
| plot3d | 0.996 | 0.011 | 1.008 | |
| plotAutoco | 2.918 | 0.004 | 2.923 | |
| plotBox | 0.829 | 0.000 | 0.829 | |
| plotHeatmap | 1.858 | 0.008 | 1.865 | |
| plotHist | 0.49 | 0.00 | 0.49 | |
| plotIGFit | 0.464 | 0.000 | 0.464 | |
| plotScatter | 1.442 | 0.028 | 1.470 | |
| plotSights | 1.985 | 0.004 | 1.989 | |
| statFDR | 0.060 | 0.000 | 0.061 | |
| statRVM | 0.017 | 0.000 | 0.017 | |
| statSights | 0.024 | 0.000 | 0.024 | |
| statT | 0.048 | 0.000 | 0.049 | |