Package: sapFinder

Version: 1.21.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sapFinder_1.21.1.tar.gz && rm -rf sapFinder.buildbin-libdir && mkdir sapFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sapFinder.buildbin-libdir sapFinder_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sapFinder_1.21.1.zip && rm sapFinder_1.21.1.tar.gz sapFinder_1.21.1.zip

StartedAt: 2019-04-08 18:42:16 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:43:45 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 88.4 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sapFinder_1.21.1.tar.gz && rm -rf sapFinder.buildbin-libdir && mkdir sapFinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sapFinder.buildbin-libdir sapFinder_1.21.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sapFinder_1.21.1.zip && rm sapFinder_1.21.1.tar.gz sapFinder_1.21.1.zip
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install for i386

* installing *source* package 'sapFinder' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dataHandle.cpp -o dataHandle.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sapFinder.dll tmp.def dataHandle.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sapFinder.buildbin-libdir/00LOCK-sapFinder/00new/sapFinder/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sapFinder'
    finding HTML links ... done
    dbCreator                               html  
    easyRun                                 html  
    parserGear                              html  
    reportCreator                           html  
    runTandem                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sapFinder' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c dataHandle.cpp -o dataHandle.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sapFinder.dll tmp.def dataHandle.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sapFinder.buildbin-libdir/sapFinder/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sapFinder' as sapFinder_1.21.1.zip
* DONE (sapFinder)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sapFinder' successfully unpacked and MD5 sums checked