Package: mcaGUI

Version: 1.31.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:mcaGUI.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings mcaGUI_1.31.0.tar.gz

StartedAt: 2019-04-09 03:17:25 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 03:22:24 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 299.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: mcaGUI.Rcheck

Warnings: 2

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:mcaGUI.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings mcaGUI_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/mcaGUI.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mcaGUI/DESCRIPTION’ ... OK
* this is package ‘mcaGUI’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘iplots’

Depends: includes the non-default packages:
  'lattice', 'MASS', 'proto', 'foreign', 'gWidgets', 'gWidgetsRGtk2',
  'OTUbase', 'vegan', 'bpca'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mcaGUI’ can be installed ... WARNING
Found the following significant warnings:
  Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
See ‘/Users/biocbuild/bbs-3.9-bioc/meat/mcaGUI.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘OTUbase’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  ‘gWidgets’ ‘gWidgetsRGtk2’ ‘lattice’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘MASS’ ‘OTUbase’ ‘bpca’ ‘foreign’ ‘gWidgets’ ‘gWidgetsRGtk2’
  ‘lattice’ ‘proto’ ‘vegan’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' calls which should be '::':
  ‘gWidgets:::editFormulaDialog’ ‘utils:::getCRANmirrors’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘mcaGUI/R/zzz.R’:
  .onLoad calls:
    cat("Loading mcaGUI()\n")
    print("You can access the mcaGUI vignette by browsing to:  ")
    print(system.file("doc", "An_Introduction_and_User_Guide_for_mcaGUI.pdf",     package = "mcaGUI"))

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.

Found the following possibly unsafe calls:
File ‘mcaGUI/R/ibestgui.filemenu.R’:
  assignInNamespace("pmg.window", NULL, "ibestGUI")

Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] ""
GUI requires an interactive environment
getAllPackages: warning in .packages(all = TRUE): partial argument
  match of 'all' to 'all.available'
.editDFProperties : <anonymous>: no visible global function definition
  for ‘head’
.editDFProperties : <anonymous>: no visible binding for global variable
  ‘getType’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘ggroup’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘glabel’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘glayout’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘gdroplist’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘svalue<-’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘gedit’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘visible<-’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘gseparator’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘gdf’
.editDFProperties : <anonymous> : getIndex: no visible global function
  definition for ‘svalue’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘addHandlerChanged’
.editDFProperties : <anonymous> : <anonymous>: no visible global
  function definition for ‘svalue’
.editDFProperties : <anonymous> : updateDF: no visible global function
  definition for ‘delete’
.editDFProperties : <anonymous> : updateDF: no visible global function
  definition for ‘gdf’
.editDFProperties : <anonymous> : updateDF: no visible global function
  definition for ‘head’
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for ‘delete’
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for ‘gdroplist’
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for ‘svalue<-’
.editDFProperties : <anonymous> : updateNames: no visible global
  function definition for ‘addHandlerChanged’
.editDFProperties : <anonymous> : updateNames : <anonymous>: no visible
  global function definition for ‘svalue’
.editDFProperties : <anonymous> : updateNames : <anonymous>: no visible
  global function definition for ‘svalue<-’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘svalue’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘gconfirm’
.editDFProperties : <anonymous>: no visible global function definition
  for ‘dispose’
.newSet : setISetByName: no visible global function definition for
  ‘iset.list’
.newSet : setISetByName: no visible global function definition for
  ‘iset.set’
.newSet: no visible global function definition for ‘iset.list’
.newSet: no visible global function definition for ‘iset.set’
.newSet: no visible global function definition for ‘iset.new’
.newSet: no visible global function definition for ‘iset.df’
.newSet: no visible global function definition for ‘gtable’
.newSet: no visible global function definition for ‘adddropsource’
.newSet: no visible global function definition for ‘gdroplist’
.newSet: no visible global function definition for ‘gimage’
.newSet: no visible global function definition for ‘glabel’
.newSet: no visible global function definition for ‘gbutton’
.newSet: no visible global function definition for ‘gtext’
.newSet: no visible global function definition for ‘ggroup’
.newSet: no visible global function definition for ‘gpanedgroup’
.newSet: no visible global function definition for ‘add’
.newSet: no visible global function definition for ‘size<-’
.newSet: no visible global function definition for ‘gframe’
.newSet: no visible global function definition for ‘addhandlerchanged’
.newSet : <anonymous>: no visible global function definition for
  ‘svalue’
.newSet : <anonymous>: no visible global function definition for ‘ibox’
.newSet : <anonymous>: no visible global function definition for
  ‘imosaic’
.newSet : <anonymous>: no visible global function definition for ‘ipcp’
.newSet : <anonymous>: no visible global function definition for
  ‘svalue<-’
.newSet: no visible global function definition for ‘addhandlerclicked’
.newSet : <anonymous>: no visible global function definition for
  ‘iset.selected’
.newSet : <anonymous>: no visible global function definition for
  ‘iset.select’
.newSet : <anonymous>: no visible global function definition for
  ‘iplot.cur’
.newSet : <anonymous>: no visible global function definition for
  ‘iplot.list’
.newSet : <anonymous>: no visible global function definition for
  ‘iplot.set’
.newSet : <anonymous>: no visible global function definition for
  ‘ggroup’
.newSet : <anonymous>: no visible global function definition for
  ‘gframe’
.newSet : <anonymous>: no visible global function definition for
  ‘glabel’
.newSet : <anonymous>: no visible global function definition for
  ‘adddroptarget’
.newSet : <anonymous>: no visible global function definition for
  ‘font<-’
.newSet : <anonymous>: no visible global function definition for
  ‘gcheckbox’
.newSet : <anonymous>: no visible global function definition for
  ‘gbutton’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘svalue’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘iset.selected’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘lm’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘iabline’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘ilines’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘lowess’
.newSet : <anonymous>: no visible global function definition for
  ‘gedit’
.newSet : <anonymous> : <anonymous>: no visible global function
  definition for ‘svalue’
.newSet : <anonymous>: no visible global function definition for
  ‘addSpring’
.newSet : <anonymous> : <anonymous>: no visible global function
  definition for ‘dispose’
.newSet : <anonymous>: no visible global function definition for
  ‘iobj.rm’
.newSet : <anonymous>: no visible global function definition for
  ‘iobj.cur’
.newSet : <anonymous>: no visible global function definition for
  ‘.jstrVal’
.newSet : getCurrentPlotNameType: no visible global function definition
  for ‘iplot.list’
.newSet : getCurrentPlotNameType: no visible global function definition
  for ‘iplot.cur’
.newSet : updateCurrentPlotDescription: no visible global function
  definition for ‘svalue<-’
OTUbasereader : openHandler: no visible global function definition for
  ‘visible<-’
OTUbasereader : closeHandler: no visible global function definition for
  ‘visible<-’
OTUbasereader: no visible global function definition for ‘gwindow’
OTUbasereader: no visible global function definition for ‘glayout’
OTUbasereader: no visible global function definition for ‘glabel’
OTUbasereader: no visible global function definition for ‘gedit’
OTUbasereader: no visible global function definition for ‘gfilebrowse’
OTUbasereader: no visible global function definition for ‘guiToolkit’
OTUbasereader : setwdHandler: no visible global function definition for
  ‘svalue’
OTUbasereader: no visible global function definition for
  ‘addHandlerChanged’
OTUbasereader: no visible global function definition for ‘gradio’
OTUbasereader: no visible global function definition for ‘gbutton’
OTUbasereader : OTUbase: no visible global function definition for
  ‘svalue’
OTUbasereader : OTUbase: no visible global function definition for
  ‘svalue<-’
OTUbasereader : OTUbase: no visible binding for '<<-' assignment to
  ‘OTUset’
OTUbasereader : OTUbase: no visible global function definition for
  ‘readOTUset’
OTUbasereader : OTUbase: no visible global function definition for
  ‘aData’
OTUbasereader : OTUbase: no visible global function definition for
  ‘sData’
OTUbasereader : OTUbase: no visible global function definition for
  ‘visible<-’
Proportion_Or_Count_Reader : .readRDP: no visible global function
  definition for ‘read.table’
Proportion_Or_Count_Reader : openHandler: no visible global function
  definition for ‘visible<-’
Proportion_Or_Count_Reader : closeHandler: no visible global function
  definition for ‘visible<-’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘gwindow’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘glayout’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘glabel’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘gedit’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘gfilebrowse’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘guiToolkit’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘gradio’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘gbutton’
Proportion_Or_Count_Reader : createAbundanceTable: no visible global
  function definition for ‘svalue’
Proportion_Or_Count_Reader : createAbundanceTable: no visible global
  function definition for ‘read.table’
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
  for global variable ‘Sample_Data’
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
  for global variable ‘collab2’
Proportion_Or_Count_Reader: no visible global function definition for
  ‘addHandlerClicked’
Proportion_Or_Count_Reader : new.window : closeHandler2: no visible
  global function definition for ‘visible<-’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘gwindow’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘glayout’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘glabel’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘gedit’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘gfilebrowse’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘guiToolkit’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘gradio’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for ‘svalue’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for ‘read.table’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for ‘glabel’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible binding for '<<-' assignment to ‘collab2’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible global function definition for ‘gdroplist’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘gbutton’
Proportion_Or_Count_Reader : new.window: no visible global function
  definition for ‘addHandlerClicked’
RSiteSearch.Dialog: no visible global function definition for ‘glayout’
RSiteSearch.Dialog: no visible global function definition for ‘ggroup’
RSiteSearch.Dialog: no visible global function definition for ‘glabel’
RSiteSearch.Dialog: no visible global function definition for ‘gedit’
RSiteSearch.Dialog: no visible global function definition for
  ‘gdroplist’
RSiteSearch.Dialog: no visible global function definition for
  ‘gspinbutton’
RSiteSearch.Dialog: no visible global function definition for
  ‘visible<-’
RSiteSearch.Dialog: no visible global function definition for ‘add’
RSiteSearch.Dialog: no visible global function definition for
  ‘gseparator’
RSiteSearch.Dialog: no visible global function definition for
  ‘addSpring’
RSiteSearch.Dialog: no visible global function definition for ‘gbutton’
RSiteSearch.Dialog : <anonymous>: no visible global function definition
  for ‘dispose’
RSiteSearch.Dialog: no visible global function definition for
  ‘addhandlerclicked’
RSiteSearch.Dialog : <anonymous>: no visible global function definition
  for ‘svalue’
RSiteSearch.Dialog : <anonymous>: no visible global function definition
  for ‘RSiteSearch’
as.dLatticeExplorer: no visible global function definition for ‘tag’
bootstrap : norm.inter: no visible global function definition for
  ‘qnorm’
bootstrap : bca.mean: no visible global function definition for ‘var’
bootstrap : bca.mean: no visible global function definition for ‘qnorm’
bootstrap : bca.mean: no visible global function definition for ‘pnorm’
bootstrap : bca.mean: no visible global function definition for
  ‘dev.new’
bootstrap : bca.mean: no visible global function definition for ‘hist’
bootstrap : bca.median: no visible global function definition for ‘var’
bootstrap : bca.median: no visible global function definition for
  ‘qnorm’
bootstrap : bca.median: no visible global function definition for
  ‘pnorm’
bootstrap : bca.median: no visible global function definition for
  ‘dev.new’
bootstrap : bca.median: no visible global function definition for
  ‘hist’
bootstrap : bca.sd: no visible global function definition for ‘var’
bootstrap : bca.sd: no visible global function definition for ‘qnorm’
bootstrap : bca.sd: no visible global function definition for ‘pnorm’
bootstrap : bca.sd: no visible global function definition for ‘dev.new’
bootstrap : bca.sd: no visible global function definition for ‘hist’
bootstrap : bca.cv: no visible global function definition for ‘var’
bootstrap : bca.cv: no visible global function definition for ‘qnorm’
bootstrap : bca.cv: no visible global function definition for ‘pnorm’
bootstrap : bca.cv: no visible global function definition for ‘dev.new’
bootstrap : bca.cv: no visible global function definition for ‘hist’
checkForUpdates: no visible global function definition for
  ‘old.packages’
checkForUpdatesGUI: no visible global function definition for ‘ggroup’
checkForUpdatesGUI: no visible global function definition for ‘glabel’
checkForUpdatesGUI: no visible global function definition for
  ‘gstatusbar’
checkForUpdatesGUI: no visible global function definition for
  ‘visible<-’
checkForUpdatesGUI: no visible global function definition for
  ‘svalue<-’
clearPanel: no visible global function definition for ‘tag’
clearPanel: no visible global function definition for ‘tag<-’
clearPlot: no visible global function definition for ‘tag<-’
clearPlot: no visible global function definition for ‘tag’
clearPlot: no visible global function definition for ‘removehandler’
clearPlot: no visible global function definition for ‘svalue<-’
cluster: no visible global function definition for ‘vegdist’
cluster: no visible global function definition for ‘hclust’
cluster: no visible global function definition for ‘plot’
constructionOfNormal: no visible global function definition for
  ‘gwindow’
constructionOfNormal : updatePlot: no visible global function
  definition for ‘svalue’
constructionOfNormal : updatePlot: no visible global function
  definition for ‘hist’
constructionOfNormal : updatePlot: no visible global function
  definition for ‘plot’
constructionOfNormal : updatePlot: no visible global function
  definition for ‘curve’
constructionOfNormal : updatePlot: no visible global function
  definition for ‘dnorm’
constructionOfNormal : updatePlot: no visible binding for global
  variable ‘x’
constructionOfNormal : updatePlot: no visible global function
  definition for ‘sd’
constructionOfNormal: no visible global function definition for
  ‘gdroplist’
constructionOfNormal: no visible global function definition for
  ‘addhandlerchanged’
constructionOfNormal : <anonymous>: no visible global function
  definition for ‘svalue’
constructionOfNormal : <anonymous>: no visible global function
  definition for ‘svalue<-’
constructionOfNormal : <anonymous>: no visible global function
  definition for ‘enabled<-’
constructionOfNormal: no visible global function definition for
  ‘glabel’
constructionOfNormal: no visible global function definition for ‘gedit’
constructionOfNormal: no visible global function definition for
  ‘gcheckbox’
constructionOfNormal: no visible global function definition for
  ‘ggroup’
constructionOfNormal: no visible global function definition for
  ‘gframe’
constructionOfNormal: no visible global function definition for
  ‘glayout’
constructionOfNormal: no visible global function definition for
  ‘visible<-’
constructionOfNormal: no visible global function definition for ‘add’
constructionOfNormal: no visible global function definition for
  ‘addSpring’
constructionOfNormal: no visible global function definition for
  ‘gbutton’
constructionOfNormal : <anonymous>: no visible global function
  definition for ‘dispose’
constructionOfNormal: no visible global function definition for
  ‘ggraphics’
dLatticeExplorer: no visible global function definition for ‘ggroup’
dLatticeExplorer: no visible global function definition for ‘ggraphics’
dLatticeExplorer: no visible global function definition for ‘tag<-’
dLatticeExplorer: no visible global function definition for ‘add’
dLatticeExplorer: no visible global function definition for ‘gframe’
dLatticeExplorer : handler: no visible global function definition for
  ‘tag’
dLatticeExplorer : handler: no visible global function definition for
  ‘tag<-’
dLatticeExplorer : handler: no visible global function definition for
  ‘addhandlerchanged’
dLatticeExplorer: no visible global function definition for
  ‘adddroptarget’
dLatticeExplorer: no visible global function definition for ‘gbutton’
dLatticeExplorer : <anonymous>: no visible global function definition
  for ‘svalue<-’
dLatticeExplorer: no visible global function definition for ‘addSpring’
dLatticeExplorer: no visible global function definition for ‘gdroplist’
dLatticeExplorer : <anonymous>: no visible global function definition
  for ‘svalue’
dLatticeExplorer : <anonymous>: no visible global function definition
  for ‘tag<-’
dLatticeExplorer: no visible global function definition for ‘svalue<-’
dLatticeExplorer: no visible global function definition for ‘glabel’
dLatticeExplorer: no visible global function definition for
  ‘gseparator’
dLatticeExplorer: no visible global function definition for
  ‘gcheckboxgroup’
dLatticeExplorer: no visible global function definition for
  ‘addhandlerunrealize’
dSummaryDialog: no visible global function definition for ‘ggroup’
dSummaryDialog: no visible global function definition for ‘tag<-’
dSummaryDialog: no visible global function definition for ‘glayout’
dSummaryDialog: no visible global function definition for ‘glabel’
dSummaryDialog: no visible global function definition for ‘font<-’
dSummaryDialog: no visible global function definition for ‘enabled<-’
dSummaryDialog: no visible global function definition for ‘add’
dSummaryDialog: no visible global function definition for ‘visible<-’
dSummaryDialog: no visible global function definition for ‘addSpring’
dSummaryDialog: no visible global function definition for ‘gbutton’
dSummaryDialog: no visible global function definition for ‘gdroplist’
dSummaryDialog: no visible global function definition for ‘gseparator’
dSummaryDialog: no visible global function definition for ‘gtext’
dSummaryDialog: no visible global function definition for
  ‘addhandlerchanged’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘tag’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘removehandler’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘tag<-’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘svalue’
dSummaryDialog: no visible global function definition for
  ‘adddroptarget’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘svalue<-’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘addhandlerchanged’
dSummaryDialog : <anonymous>: no visible global function definition for
  ‘enabled<-’
dSummaryDialog : clear: no visible global function definition for
  ‘svalue<-’
dSummaryDialog : clear: no visible global function definition for
  ‘dispose’
dSummaryDialog : clear: no visible global function definition for
  ‘tag<-’
dSummaryDialog : update: no visible global function definition for
  ‘tag’
dSummaryDialog : update: no visible global function definition for
  ‘svalue’
dSummaryDialog : update: no visible global function definition for ‘id’
dSummaryDialog : update: no visible global function definition for
  ‘capture.output’
dSummaryDialog : update: no visible global function definition for
  ‘dispose’
dSummaryDialog : update: no visible global function definition for
  ‘add’
dSummaryDialog : clearDropHandlers: no visible global function
  definition for ‘tag’
dSummaryDialog : clearDropHandlers: no visible global function
  definition for ‘removehandler’
dSummaryDialog: no visible global function definition for
  ‘addhandlerunrealize’
diversityfun: no visible global function definition for ‘diversity’
dp: no visible global function definition for ‘gray’
dp: no visible global function definition for ‘png’
dp: no visible global function definition for ‘par’
dp: no visible global function definition for ‘plot.new’
dp: no visible global function definition for ‘plot.window’
dp: no visible global function definition for ‘text’
dp: no visible global function definition for ‘density’
dp: no visible global function definition for ‘plot’
dp: no visible global function definition for ‘rug’
dp: no visible global function definition for ‘polygon’
dp: no visible global function definition for ‘dev.off’
dpqrfuncs: no visible global function definition for ‘ggroup’
dpqrfuncs: no visible global function definition for ‘glabel’
dpqrfuncs: no visible global function definition for ‘gdroplist’
dpqrfuncs: no visible global function definition for ‘gedit’
dpqrfuncs: no visible global function definition for ‘gcheckbox’
dpqrfuncs: no visible global function definition for ‘gtext’
dpqrfuncs: no visible global function definition for ‘glayout’
dpqrfuncs: no visible global function definition for ‘addSpring’
dpqrfuncs: no visible global function definition for ‘gbutton’
dpqrfuncs: no visible global function definition for ‘visible<-’
dpqrfuncs: no visible global function definition for
  ‘addhandlerchanged’
dpqrfuncs : <anonymous>: no visible global function definition for
  ‘svalue’
dpqrfuncs : <anonymous>: no visible global function definition for
  ‘svalue<-’
dpqrfuncs : <anonymous>: no visible global function definition for
  ‘enabled<-’
dpqrfuncs : <anonymous>: no visible global function definition for
  ‘ghelp’
exit.pmg: no visible global function definition for ‘assignInNamespace’
getAllVignettes: no visible global function definition for ‘vignette’
getCranSiteIfNeeded : handler: no visible global function definition
  for ‘svalue’
getCranSiteIfNeeded: no visible global function definition for ‘ggroup’
getCranSiteIfNeeded: no visible global function definition for ‘glabel’
getCranSiteIfNeeded: no visible global function definition for ‘gtable’
getCranSiteIfNeeded: no visible global function definition for ‘size<-’
getCranSiteIfNeeded: no visible global function definition for
  ‘gbasicdialog’
getDataSets: no visible global function definition for ‘data’
histogramAndDensity: no visible global function definition for
  ‘gwindow’
histogramAndDensity : updatePlot: no visible global function definition
  for ‘plot.new’
histogramAndDensity : updatePlot: no visible global function definition
  for ‘plot.window’
histogramAndDensity : updatePlot: no visible global function definition
  for ‘svalue’
histogramAndDensity : updatePlot: no visible global function definition
  for ‘hist’
histogramAndDensity : updatePlot: no visible global function definition
  for ‘plot’
histogramAndDensity : addDensity: no visible global function definition
  for ‘svalue’
histogramAndDensity : addDensity: no visible global function definition
  for ‘curve’
histogramAndDensity : addDensity: no visible binding for global
  variable ‘x’
histogramAndDensity: no visible global function definition for
  ‘gdroplist’
histogramAndDensity: no visible global function definition for
  ‘addhandlerchanged’
histogramAndDensity : <anonymous>: no visible global function
  definition for ‘svalue’
histogramAndDensity : <anonymous>: no visible global function
  definition for ‘svalue<-’
histogramAndDensity : <anonymous>: no visible global function
  definition for ‘enabled<-’
histogramAndDensity: no visible global function definition for ‘gradio’
histogramAndDensity: no visible global function definition for
  ‘gcheckbox’
histogramAndDensity: no visible global function definition for ‘glabel’
histogramAndDensity: no visible global function definition for ‘gedit’
histogramAndDensity: no visible global function definition for ‘ggroup’
histogramAndDensity: no visible global function definition for ‘gframe’
histogramAndDensity: no visible global function definition for
  ‘glayout’
histogramAndDensity: no visible global function definition for
  ‘visible<-’
histogramAndDensity: no visible global function definition for ‘add’
histogramAndDensity: no visible global function definition for
  ‘addSpring’
histogramAndDensity: no visible global function definition for
  ‘gbutton’
histogramAndDensity : <anonymous>: no visible global function
  definition for ‘dispose’
histogramAndDensity: no visible global function definition for
  ‘ggraphics’
importFile : <anonymous>: no visible binding for global variable
  ‘svalue’
importFile : <anonymous>: no visible global function definition for
  ‘svalue’
importFile : <anonymous>: no visible global function definition for
  ‘gconfirm’
importFile : <anonymous>: no visible global function definition for
  ‘dispose’
importFile : <anonymous>: no visible global function definition for
  ‘gedit’
importFile : <anonymous>: no visible global function definition for
  ‘ggroup’
importFile : <anonymous>: no visible global function definition for
  ‘glabel’
importFile : <anonymous>: no visible global function definition for
  ‘glayout’
importFile : <anonymous>: no visible global function definition for
  ‘visible<-’
importFile : <anonymous>: no visible global function definition for
  ‘gframe’
importFile : <anonymous>: no visible global function definition for
  ‘gdroplist’
importFile : <anonymous>: no visible global function definition for
  ‘gspinbutton’
importFile : <anonymous> : makePreview: no visible binding for global
  variable ‘svalue’
importFile : <anonymous> : makePreview: no visible global function
  definition for ‘delete’
importFile : <anonymous> : makePreview: no visible global function
  definition for ‘ggroup’
importFile : <anonymous> : makePreview: no visible global function
  definition for ‘gdf’
importFile : <anonymous> : <anonymous>: no visible global function
  definition for ‘addHandlerChanged’
is.RGtkObject: no visible global function definition for ‘is’
is.gComponent: no visible global function definition for ‘is’
is.gContainer: no visible global function definition for ‘is’
is.gGrid: no visible global function definition for ‘is’
is.gImage: no visible global function definition for ‘is’
is.gLabel: no visible global function definition for ‘is’
is.gMenu: no visible global function definition for ‘is’
is.gWidget: no visible global function definition for ‘is’
is.gWindow: no visible global function definition for ‘is’
is.guiWidget: no visible global function definition for ‘is’
kurtosis.default: no visible global function definition for ‘var’
lsDatasets: no visible global function definition for ‘.GlobalEnv’
lsFunctions: no visible global function definition for ‘.GlobalEnv’
lsModels: no visible global function definition for ‘.GlobalEnv’
lsTs: no visible global function definition for ‘.GlobalEnv’
makeEmptyPlot: no visible global function definition for ‘plot.new’
makeEmptyPlot: no visible global function definition for ‘plot.window’
makeEmptyPlot: no visible global function definition for ‘text’
mcaGUI: no visible global function definition for ‘assignInNamespace’
mcaGUI: no visible global function definition for ‘size<-’
mcaGUI: no visible global function definition for ‘gmenu’
mcaGUI: no visible global function definition for ‘gnotebook’
mcaGUI: no visible global function definition for ‘gstatusbar’
mcaGUI: no visible global function definition for ‘ggroup’
mcaGUI: no visible global function definition for ‘add’
mcaGUI: no visible binding for global variable ‘pmg.user.menu’
mcaGUI: no visible binding for global variable ‘pmg.menubar’
mcaGUI: no visible global function definition for ‘gvarbrowser’
mcaGUI : <anonymous>: no visible global function definition for
  ‘svalue’
mcaGUI : <anonymous>: no visible global function definition for ‘add’
mcaGUI: no visible global function definition for ‘gexpandgroup’
mcaGUI: no visible global function definition for ‘visible<-’
mcaGUI: no visible global function definition for ‘gpanedgroup’
mcaGUI : <anonymous>: no visible global function definition for
  ‘dispose’
mcaGUI : <anonymous>: no visible global function definition for
  ‘assignInNamespace’
mcaGUI : <anonymous>: no visible global function definition for ‘gfile’
mcaGUI : <anonymous>: no visible global function definition for
  ‘ggraphicsnotebook’
mcaGUI : <anonymous>: no visible global function definition for
  ‘focus<-’
mcaGUI : <anonymous>: no visible global function definition for
  ‘ghelpbrowser’
mcaGUI: no visible global function definition for ‘gtoolbar’
mcaGUI: no visible global function definition for ‘gimage’
mcaGUI: no visible global function definition for ‘addSpace’
mcaGUI: no visible global function definition for ‘gseparator’
mcaGUI: no visible global function definition for ‘addSpring’
mcaGUI: no visible global function definition for ‘adddroptarget’
mcaGUI : <anonymous>: no visible global function definition for
  ‘svalue<-’
mcaGUI: no visible binding for '<<-' assignment to ‘send’
mcaGUI: no visible global function definition for ‘gcommandline’
mcaGUI : pmg.data.frame.viewer.nb: no visible global function
  definition for ‘gtext’
panel.mean: no visible global function definition for ‘panel.abline’
panel.median: no visible global function definition for ‘panel.abline’
panel.median: no visible global function definition for ‘median’
plotecdf: no visible global function definition for ‘plot’
plotecdf: no visible global function definition for ‘ecdf’
pmg.about: no visible global function definition for ‘ggroup’
pmg.about: no visible global function definition for ‘size<-’
pmg.about: no visible global function definition for ‘glabel’
pmg.about: no visible global function definition for ‘addSpring’
pmg.about: no visible global function definition for ‘gbutton’
pmg.about.R: no visible global function definition for ‘ggroup’
pmg.about.R: no visible global function definition for ‘gimage’
pmg.about.R: no visible global function definition for ‘glabel’
pmg.add: no visible global function definition for ‘add’
pmg.addMenubar: no visible global function definition for ‘add’
pmg.castGUI: no visible global function definition for ‘ggroup’
pmg.castGUI: no visible global function definition for ‘gedit’
pmg.castGUI: no visible global function definition for ‘gtable’
pmg.castGUI: no visible global function definition for ‘adddropsource’
pmg.castGUI : <anonymous>: no visible global function definition for
  ‘svalue’
pmg.castGUI: no visible global function definition for ‘glabel’
pmg.castGUI: no visible global function definition for ‘font<-’
pmg.castGUI: no visible global function definition for ‘gdroplist’
pmg.castGUI: no visible global function definition for ‘gbutton’
pmg.castGUI: no visible global function definition for ‘glayout’
pmg.castGUI: no visible global function definition for ‘visible<-’
pmg.castGUI: no visible global function definition for ‘add’
pmg.castGUI: no visible global function definition for ‘gseparator’
pmg.castGUI: no visible global function definition for ‘gexpandgroup’
pmg.castGUI : getCast: no visible global function definition for
  ‘svalue’
pmg.castGUI : getCast: no visible global function definition for
  ‘as.formula’
pmg.castGUI : cleanPreview: no visible global function definition for
  ‘delete’
pmg.castGUI : cleanPreview: no visible global function definition for
  ‘glabel’
pmg.castGUI : cleanPreview: no visible global function definition for
  ‘add’
pmg.castGUI: no visible global function definition for
  ‘addhandlerchanged’
pmg.castGUI : <anonymous>: no visible global function definition for
  ‘gmessage’
pmg.castGUI : <anonymous>: no visible global function definition for
  ‘svalue<-’
pmg.castGUI : formulaDropHandler: no visible global function definition
  for ‘svalue’
pmg.castGUI : formulaDropHandler: no visible global function definition
  for ‘svalue<-’
pmg.castGUI: no visible global function definition for ‘adddroptarget’
pmg.castGUI : updateHandler: no visible global function definition for
  ‘gmessage’
pmg.castGUI : updateHandler: no visible global function definition for
  ‘delete’
pmg.castGUI : updateHandler: no visible global function definition for
  ‘gtable’
pmg.castGUI : updateHandler: no visible global function definition for
  ‘head’
pmg.castGUI : updateHandler: no visible global function definition for
  ‘add’
pmg.castGUI : updateHandler: no visible global function definition for
  ‘enabled<-’
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for ‘svalue<-’
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for ‘delete’
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for ‘glabel’
pmg.castGUI : clearFormulaHandler: no visible global function
  definition for ‘add’
pmg.castGUI : editSubsetHandler: no visible global function definition
  for ‘svalue’
pmg.castGUI : editSubsetHandler: no visible global function definition
  for ‘gmessage’
pmg.castGUI : editSubsetHandler: no visible global function definition
  for ‘editSubsetDialog’
pmg.castGUI : saveAsHandler: no visible global function definition for
  ‘gmessage’
pmg.castGUI : saveAsHandler: no visible global function definition for
  ‘svalue’
pmg.castGUI : saveAsHandler: no visible global function definition for
  ‘gconfirm’
pmg.castGUI : saveAsHandler: no visible global function definition for
  ‘enabled<-’
pmg.chooseCRANmirror: no visible global function definition for
  ‘read.csv’
pmg.chooseCRANmirror: no visible global function definition for
  ‘size<-’
pmg.chooseCRANmirror: no visible global function definition for
  ‘ggroup’
pmg.chooseCRANmirror: no visible global function definition for
  ‘gtable’
pmg.chooseCRANmirror : <anonymous>: no visible global function
  definition for ‘svalue’
pmg.chooseCRANmirror : <anonymous>: no visible global function
  definition for ‘dispose’
pmg.chooseCRANmirror: no visible global function definition for ‘add’
pmg.chooseCRANmirror: no visible global function definition for
  ‘gstatusbar’
pmg.chooseCRANmirror: no visible global function definition for
  ‘visible<-’
pmg.closeAll: no visible global function definition for
  ‘getFromNamespace’
pmg.closeAll: no visible global function definition for ‘dispose’
pmg.closeAll: no visible global function definition for
  ‘assignInNamespace’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘ggroup’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘add’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘glabel’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘gseparator’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘glayout’
pmg.edit.dataframe.properties.dialog : selHandler: no visible global
  function definition for ‘svalue’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘gdroplist’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘gbutton’
pmg.edit.dataframe.properties.dialog: no visible global function
  definition for ‘visible<-’
pmg.eval: no visible global function definition for ‘svalue<-’
pmg.getCRANPackages: no visible global function definition for
  ‘installed.packages’
pmg.getCRANPackages: no visible global function definition for
  ‘available.packages’
pmg.gw: no visible global function definition for ‘ggenericwidget’
pmg.gw: no visible global function definition for ‘ggroup’
pmg.gw: no visible global function definition for ‘add’
pmg.help: no visible global function definition for ‘assignInNamespace’
pmg.help: no visible global function definition for ‘ghelpbrowser’
pmg.help: no visible global function definition for ‘focus<-’
pmg.help: no visible global function definition for ‘add’
pmg.installCRANPackage : addPackageList: no visible global function
  definition for ‘svalue<-’
pmg.installCRANPackage : addPackageList: no visible global function
  definition for ‘svalue’
pmg.installCRANPackage : addPackageList: no visible global function
  definition for ‘enabled<-’
pmg.installCRANPackage: no visible global function definition for
  ‘ggroup’
pmg.installCRANPackage: no visible global function definition for
  ‘glayout’
pmg.installCRANPackage: no visible global function definition for
  ‘glabel’
pmg.installCRANPackage: no visible global function definition for
  ‘gedit’
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for ‘svalue’
pmg.installCRANPackage: no visible global function definition for
  ‘gbutton’
pmg.installCRANPackage: no visible global function definition for
  ‘addhandlerclicked’
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for ‘svalue<-’
pmg.installCRANPackage: no visible global function definition for
  ‘gdroplist’
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for ‘gfile’
pmg.installCRANPackage : <anonymous> : <anonymous>: no visible global
  function definition for ‘svalue<-’
pmg.installCRANPackage : <anonymous> : <anonymous>: no visible global
  function definition for ‘svalue’
pmg.installCRANPackage: no visible global function definition for
  ‘gstatusbar’
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for ‘install.packages’
pmg.installCRANPackage: no visible global function definition for
  ‘enabled<-’
pmg.installCRANPackage : <anonymous>: no visible global function
  definition for ‘dispose’
pmg.installCRANPackage: no visible global function definition for ‘add’
pmg.installCRANPackage: no visible global function definition for
  ‘gtable’
pmg.installCRANPackage: no visible global function definition for
  ‘size<-’
pmg.installCRANPackage: no visible global function definition for
  ‘visible<-’
pmg.installCRANPackage: no visible global function definition for
  ‘gseparator’
pmg.installCRANPackage: no visible global function definition for
  ‘addSpring’
pmg.iplots: no visible global function definition for ‘ggroup’
pmg.iplots : <anonymous>: no visible global function definition for
  ‘dispose’
pmg.iplots: no visible global function definition for ‘gtoolbar’
pmg.iplots: no visible global function definition for ‘gnotebook’
pmg.iplots: no visible global function definition for ‘add’
pmg.iplots: no visible global function definition for ‘size<-’
pmg.iplots : addNewDF: no visible global function definition for
  ‘ggroup’
pmg.iplots : addNewDF: no visible global function definition for ‘add’
pmg.iplots : addNewDF: no visible global function definition for
  ‘glabel’
pmg.iplots : addNewDF: no visible global function definition for
  ‘gtable’
pmg.iplots : addNewDF: no visible global function definition for
  ‘addhandlerdoubleclick’
pmg.iplots : addNewDF : <anonymous>: no visible global function
  definition for ‘svalue’
pmg.iplots : addNewDF : <anonymous>: no visible global function
  definition for ‘add’
pmg.iplots : addNewDF : <anonymous>: no visible global function
  definition for ‘dispose’
pmg.iplots : addNewDF: no visible global function definition for
  ‘gmessage’
pmg.loadPackages: no visible global function definition for ‘size<-’
pmg.loadPackages: no visible global function definition for ‘ggroup’
pmg.loadPackages : packageHandler: no visible global function
  definition for ‘svalue’
pmg.loadPackages : packageHandler: no visible global function
  definition for ‘svalue<-’
pmg.loadPackages: no visible global function definition for ‘gtable’
pmg.loadPackages: no visible global function definition for ‘addSpring’
pmg.loadPackages: no visible global function definition for ‘gbutton’
pmg.loadPackages : <anonymous>: no visible global function definition
  for ‘dispose’
pmg.loadPackages: no visible global function definition for
  ‘gstatusbar’
pmg.meltGUI : getMeltedObject: no visible global function definition
  for ‘svalue’
pmg.meltGUI : getMeltedObject: no visible global function definition
  for ‘gmessage’
pmg.meltGUI: no visible global function definition for ‘ggroup’
pmg.meltGUI: no visible global function definition for ‘glabel’
pmg.meltGUI: no visible global function definition for ‘glayout’
pmg.meltGUI: no visible global function definition for ‘gedit’
pmg.meltGUI: no visible global function definition for ‘gtable’
pmg.meltGUI: no visible global function definition for ‘size<-’
pmg.meltGUI: no visible global function definition for ‘gdroplist’
pmg.meltGUI: no visible global function definition for ‘gbutton’
pmg.meltGUI: no visible global function definition for ‘visible<-’
pmg.meltGUI: no visible global function definition for ‘add’
pmg.meltGUI: no visible global function definition for ‘gseparator’
pmg.meltGUI: no visible global function definition for ‘gexpandgroup’
pmg.meltGUI: no visible global function definition for ‘enabled<-’
pmg.meltGUI: no visible global function definition for
  ‘addhandlerchanged’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘svalue’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘gmessage’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘svalue<-’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘delete’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘gtable’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘head’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘add’
pmg.meltGUI : <anonymous>: no visible global function definition for
  ‘enabled<-’
pmg.meltGUI : handler: no visible global function definition for
  ‘svalue’
pmg.meltGUI : handler: no visible global function definition for
  ‘gmessage’
pmg.meltGUI : handler: no visible global function definition for
  ‘gconfirm’
pmg.meltGUI : handler: no visible global function definition for
  ‘enabled<-’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘ggroup’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘glayout’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘gfilebrowse’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘glabel’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘font<-’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘gseparator’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘gedit’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘gdroplist’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘visible<-’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘svalue’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘download.file’
pmg.specifyFileForImport : <anonymous>: no visible global function
  definition for ‘dispose’
pmg.subset.dialog: no visible global function definition for ‘ggroup’
pmg.subset.dialog: no visible global function definition for ‘gframe’
pmg.subset.dialog: no visible global function definition for ‘glayout’
pmg.subset.dialog: no visible global function definition for ‘glabel’
pmg.subset.dialog: no visible global function definition for ‘gedit’
pmg.subset.dialog: no visible global function definition for ‘gbutton’
pmg.subset.dialog : <anonymous>: no visible global function definition
  for ‘editSubsetDialog’
pmg.subset.dialog : <anonymous>: no visible global function definition
  for ‘svalue’
pmg.subset.dialog : <anonymous>: no visible global function definition
  for ‘editSelectDialog’
pmg.subset.dialog: no visible global function definition for ‘gradio’
pmg.subset.dialog : <anonymous>: no visible global function definition
  for ‘svalue<-’
pmg.subset.dialog: no visible global function definition for ‘add’
pmg.subset.dialog: no visible global function definition for
  ‘visible<-’
pmg.viewDataSets: no visible global function definition for ‘size<-’
pmg.viewDataSets: no visible global function definition for ‘ggroup’
pmg.viewDataSets : dataSetHandler: no visible global function
  definition for ‘svalue’
pmg.viewDataSets : dataSetHandler: no visible global function
  definition for ‘svalue<-’
pmg.viewDataSets: no visible global function definition for ‘gtable’
pmg.viewDataSets: no visible global function definition for ‘add’
pmg.viewDataSets: no visible global function definition for ‘addSpring’
pmg.viewDataSets: no visible global function definition for ‘gbutton’
pmg.viewDataSets : <anonymous>: no visible global function definition
  for ‘dispose’
pmg.viewDataSets: no visible global function definition for
  ‘gstatusbar’
pmgIplotInstructions: no visible global function definition for ‘gtext’
pmgIplotInstructions: no visible global function definition for ‘add’
pmgSummary.default: no visible global function definition for ‘svalue’
pmgSummary.default: no visible global function definition for ‘ggroup’
pmgSummary.default: no visible global function definition for
  ‘stockIconFromClass’
pmgSummary.default: no visible global function definition for ‘add’
pmgSummary.default: no visible global function definition for ‘gimage’
pmgSummary.default: no visible global function definition for ‘glayout’
pmgSummary.default: no visible global function definition for ‘glabel’
pmgSummary.default: no visible global function definition for
  ‘svalue<-’
pmgSummary.default: no visible global function definition for ‘gdf’
pmgSummary.default: no visible global function definition for
  ‘capture.output’
pmgSummary.default: no visible global function definition for ‘gtext’
pmgSummary.default: no visible global function definition for
  ‘enabled<-’
pmgSummary.default: no visible global function definition for
  ‘visible<-’
principle_component: no visible global function definition for ‘prcomp’
principle_component: no visible global function definition for
  ‘dev.new’
principle_component: no visible global function definition for ‘biplot’
principle_component: no visible global function definition for ‘plot’
principle_component: no visible global function definition for ‘bpca’
probabilityCalculator: no visible global function definition for
  ‘gwindow’
probabilityCalculator : initOptions: no visible global function
  definition for ‘svalue’
probabilityCalculator : initOptions: no visible global function
  definition for ‘svalue<-’
probabilityCalculator : updatePlot: no visible global function
  definition for ‘svalue’
probabilityCalculator : updatePlot: no visible global function
  definition for ‘svalue<-’
probabilityCalculator : updatePlot: no visible global function
  definition for ‘curve’
probabilityCalculator : updatePlot: no visible binding for global
  variable ‘x’
probabilityCalculator : updatePlot: no visible global function
  definition for ‘lines’
probabilityCalculator : updatePlot: no visible global function
  definition for ‘plot’
probabilityCalculator: no visible global function definition for
  ‘gdroplist’
probabilityCalculator: no visible global function definition for
  ‘addhandlerchanged’
probabilityCalculator : <anonymous>: no visible global function
  definition for ‘svalue’
probabilityCalculator : <anonymous>: no visible global function
  definition for ‘svalue<-’
probabilityCalculator : <anonymous>: no visible global function
  definition for ‘enabled<-’
probabilityCalculator: no visible global function definition for
  ‘gradio’
probabilityCalculator: no visible global function definition for
  ‘glabel’
probabilityCalculator: no visible global function definition for
  ‘gedit’
probabilityCalculator: no visible global function definition for
  ‘ggroup’
probabilityCalculator: no visible global function definition for
  ‘gframe’
probabilityCalculator: no visible global function definition for
  ‘glayout’
probabilityCalculator: no visible global function definition for
  ‘visible<-’
probabilityCalculator: no visible global function definition for ‘add’
probabilityCalculator: no visible global function definition for
  ‘addSpring’
probabilityCalculator: no visible global function definition for
  ‘gbutton’
probabilityCalculator : <anonymous>: no visible global function
  definition for ‘dispose’
probabilityCalculator: no visible global function definition for
  ‘ggraphics’
qplotGUI : getValueFromString: no visible global function definition
  for ‘svalue’
qplotGUI: no visible global function definition for ‘gnotebook’
qplotGUI: no visible global function definition for ‘ggroup’
qplotGUI: no visible global function definition for ‘glayout’
qplotGUI: no visible global function definition for ‘gdroplist’
qplotGUI: no visible global function definition for ‘gedit’
qplotGUI: no visible global function definition for ‘gseparator’
qplotGUI: no visible global function definition for ‘gtable’
qplotGUI: no visible global function definition for ‘size<-’
qplotGUI: no visible global function definition for ‘glabel’
qplotGUI: no visible global function definition for ‘gbutton’
qplotGUI : <anonymous>: no visible global function definition for
  ‘svalue’
qplotGUI: no visible global function definition for ‘visible<-’
qplotGUI: no visible global function definition for ‘svalue<-’
qplotGUI : updateGeoms: no visible global function definition for
  ‘svalue’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘svalue’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘svalue<-’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘dispose’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘ggroup’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘glabel’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘gdroplist’
qplotGUI : updateExtraArgs : <anonymous>: no visible global function
  definition for ‘formula’
qplotGUI : updateExtraArgs: no visible global function definition for
  ‘gedit’
qplotGUI : getExtraArgValues: no visible global function definition for
  ‘svalue’
qplotGUI : updateGraphic: no visible binding for global variable
  ‘svalue’
qplotGUI : updateGraphic: no visible global function definition for
  ‘formula’
qplotGUI : updateGraphic.paste: no visible binding for global variable
  ‘svalue’
qplotGUI : <anonymous>: no visible global function definition for
  ‘addHandlerChanged’
qplotGUI: no visible global function definition for ‘addHandlerClicked’
qplotGUI: no visible global function definition for ‘addHandlerChanged’
qplotGUI: no visible global function definition for ‘addDropTarget’
quantileWidget: no visible global function definition for ‘ggroup’
quantileWidget: no visible global function definition for ‘tag<-’
quantileWidget: no visible global function definition for ‘gimage’
quantileWidget: no visible global function definition for ‘gseparator’
quantileWidget: no visible global function definition for ‘glayout’
quantileWidget: no visible global function definition for ‘glabel’
quantileWidget: no visible global function definition for ‘font<-’
quantileWidget: no visible global function definition for ‘gdroplist’
quantileWidget: no visible global function definition for ‘add’
quantileWidget: no visible global function definition for ‘visible<-’
quantileWidget: no visible global function definition for ‘gtext’
quantileWidget: no visible global function definition for
  ‘addhandlerchanged’
quantileWidget : <anonymous>: no visible global function definition for
  ‘tag’
quantileWidget : <anonymous>: no visible global function definition for
  ‘removehandler’
quantileWidget : <anonymous>: no visible global function definition for
  ‘tag<-’
quantileWidget : <anonymous>: no visible global function definition for
  ‘svalue’
quantileWidget: no visible global function definition for
  ‘adddroptarget’
quantileWidget : <anonymous>: no visible global function definition for
  ‘svalue<-’
quantileWidget : <anonymous>: no visible global function definition for
  ‘addhandlerchanged’
quantileWidget : update: no visible global function definition for
  ‘svalue’
quantileWidget : update: no visible global function definition for
  ‘tag’
quantileWidget : update: no visible global function definition for
  ‘svalue<-’
quantileWidget : update: no visible global function definition for
  ‘capture.output’
quantileWidget : update: no visible global function definition for
  ‘quantile’
quantileWidget : update: no visible global function definition for
  ‘dispose’
quantileWidget : update: no visible global function definition for
  ‘add’
repeatTrialsGUI: no visible global function definition for ‘gframe’
repeatTrialsGUI: no visible global function definition for ‘glayout’
repeatTrialsGUI: no visible global function definition for ‘gedit’
repeatTrialsGUI: no visible global function definition for ‘gseparator’
repeatTrialsGUI: no visible global function definition for ‘gdroplist’
repeatTrialsGUI: no visible global function definition for ‘ggroup’
repeatTrialsGUI: no visible global function definition for ‘gbutton’
repeatTrialsGUI: no visible global function definition for ‘addSpace’
repeatTrialsGUI : <anonymous>: no visible global function definition
  for ‘ghelp’
repeatTrialsGUI: no visible global function definition for ‘visible<-’
repeatTrialsGUI: no visible global function definition for
  ‘addHandlerClicked’
repeatTrialsGUI : <anonymous>: no visible global function definition
  for ‘svalue’
richness : <anonymous>: no visible global function definition for
  ‘estimateR’
selectFile: no visible global function definition for ‘gfile’
skewness.default: no visible global function definition for ‘var’
updateLatticeOptions: no visible global function definition for ‘tag’
updateLatticeOptions: no visible global function definition for
  ‘svalue<-’
updateLatticeOptions: no visible global function definition for ‘tag<-’
updatePanel: no visible global function definition for ‘tag’
updatedLatticeExplorer: no visible global function definition for ‘tag’
updatedLatticeExplorer : <anonymous>: no visible global function
  definition for ‘id’
updatedLatticeExplorer : <anonymous>: no visible global function
  definition for ‘svalue’
updatedLatticeExplorer: no visible global function definition for
  ‘svalue’
updatedLatticeExplorer: no visible global function definition for
  ‘shingle’
updatedLatticeExplorer: no visible global function definition for ‘is’
viewDemos.Dialog: no visible global function definition for ‘demo’
viewDemos.Dialog: no visible global function definition for ‘gtable’
viewDemos.Dialog: no visible global function definition for
  ‘addhandlerdoubleclick’
viewDemos.Dialog : <anonymous>: no visible global function definition
  for ‘svalue’
viewDemos.Dialog: no visible global function definition for ‘ggroup’
viewDemos.Dialog: no visible global function definition for ‘add’
viewDemos.Dialog: no visible global function definition for ‘addSpring’
viewDemos.Dialog: no visible global function definition for ‘gbutton’
viewDemos.Dialog : <anonymous>: no visible global function definition
  for ‘dispose’
viewDemos.Dialog: no visible global function definition for ‘size<-’
viewVignettes.Dialog : defaultHandler: no visible global function
  definition for ‘svalue’
viewVignettes.Dialog: no visible global function definition for
  ‘gtable’
viewVignettes.Dialog: no visible global function definition for
  ‘ggroup’
viewVignettes.Dialog: no visible global function definition for ‘add’
viewVignettes.Dialog: no visible global function definition for
  ‘addSpring’
viewVignettes.Dialog: no visible global function definition for
  ‘gbutton’
viewVignettes.Dialog : <anonymous>: no visible global function
  definition for ‘dispose’
viewVignettes.Dialog: no visible global function definition for
  ‘size<-’
Undefined global functions or variables:
  .GlobalEnv .jstrVal RSiteSearch Sample_Data aData add addDropTarget
  addHandlerChanged addHandlerClicked addSpace addSpring adddropsource
  adddroptarget addhandlerchanged addhandlerclicked
  addhandlerdoubleclick addhandlerunrealize as.formula
  assignInNamespace available.packages biplot bpca capture.output
  collab2 curve data delete demo density dev.new dev.off dispose
  diversity dnorm download.file ecdf editSelectDialog editSubsetDialog
  enabled<- estimateR focus<- font<- formula gbasicdialog gbutton
  gcheckbox gcheckboxgroup gcommandline gconfirm gdf gdroplist gedit
  getFromNamespace getType gexpandgroup gfile gfilebrowse gframe
  ggenericwidget ggraphics ggraphicsnotebook ggroup ghelp ghelpbrowser
  gimage glabel glayout gmenu gmessage gnotebook gpanedgroup gradio
  gray gseparator gspinbutton gstatusbar gtable gtext gtoolbar
  guiToolkit gvarbrowser gwindow hclust head hist iabline ibox id
  ilines imosaic install.packages installed.packages iobj.cur iobj.rm
  ipcp iplot.cur iplot.list iplot.set is iset.df iset.list iset.new
  iset.select iset.selected iset.set lines lm lowess median
  old.packages panel.abline par plot plot.new plot.window pmg.menubar
  pmg.user.menu png pnorm polygon prcomp qnorm quantile read.csv
  read.table readOTUset removehandler rug sData sd shingle size<-
  stockIconFromClass svalue svalue<- tag tag<- text var vegdist
  vignette visible<- x
Consider adding
  importFrom("base", ".GlobalEnv")
  importFrom("grDevices", "dev.new", "dev.off", "gray", "png")
  importFrom("graphics", "curve", "hist", "lines", "par", "plot",
             "plot.new", "plot.window", "polygon", "rug", "text")
  importFrom("methods", "is")
  importFrom("stats", "as.formula", "biplot", "density", "dnorm", "ecdf",
             "formula", "hclust", "lm", "lowess", "median", "pnorm",
             "prcomp", "qnorm", "quantile", "sd", "var")
  importFrom("utils", "RSiteSearch", "assignInNamespace",
             "available.packages", "capture.output", "data", "demo",
             "download.file", "getFromNamespace", "head",
             "install.packages", "installed.packages", "old.packages",
             "read.csv", "read.table", "vignette")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘An_Introduction_and_User_Guide_for_mcaGUI.pdf’
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/mcaGUI.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL mcaGUI
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘mcaGUI’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
Note: ... may be used in an incorrect context 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] ""
GUI requires an interactive environment
** testing if installed package can be loaded from final location
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] ""
GUI requires an interactive environment
** testing if installed package keeps a record of temporary installation path
* DONE (mcaGUI)

name	user	system	elapsed
mcaGUI	0.000	0.000	0.001
pmgDynamic	0	0	0
pmgRepeatTrials	0.314	0.029	0.342