Kylie A. Bemis
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/matter |
| Branch: master |
| Last Commit: cd238d2 |
| Last Changed Date: 2019-02-13 16:56:07 -0400 (Wed, 13 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:34:07 -0400 (Tue, 09 Apr 2019).
| Package 912/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| matter 1.9.10 Kylie A. Bemis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
| Package: matter |
| Version: 1.9.10 |
| Command: rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_1.9.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R matter.buildbin-libdir |
| StartedAt: 2019-04-09 05:47:17 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:48:37 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 79.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: matter_1.9.10.tgz |
| PackageFileSize: 3.16 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_1.9.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R matter.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=matter.buildbin-libdir matter_1.9.10.tar.gz' >>>>>>> * installing *source* package ‘matter’ ... ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c bsearch.cpp -o bsearch.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c matter.cpp -o matter.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c utils.cpp -o utils.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o matter.so bsearch.o init.o matter.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/matter.buildbin-libdir/matter/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘apply’ in package ‘matter’ Creating a new generic function for ‘scale’ in package ‘matter’ Creating a new generic function for ‘biglm’ in package ‘matter’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (matter) >>>>>>> >>>>>>> FIXING LINKS FOR matter.buildbin-libdir/matter/libs//matter.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "matter.buildbin-libdir/matter/libs//matter.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "matter.buildbin-libdir/matter/libs//matter.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "matter.buildbin-libdir/matter/libs//matter.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "matter.buildbin-libdir/matter/libs//matter.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "matter.buildbin-libdir/matter/libs//matter.so"