Package: impute

Version: 1.57.0

Command: rm -rf impute.buildbin-libdir && mkdir impute.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh impute_1.57.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R impute.buildbin-libdir

StartedAt: 2019-04-09 07:13:50 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 07:14:27 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 37.0 seconds

RetCode: 0

Status:  OK

PackageFile: impute_1.57.0.tgz

PackageFileSize: 644.8 KiB

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### Running command:
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###   rm -rf impute.buildbin-libdir && mkdir impute.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh impute_1.57.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R impute.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=impute.buildbin-libdir impute_1.57.0.tar.gz'
>>>>>>> 

* installing *source* package ‘impute’ ...
** using staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c knnimpute.f -o knnimpute.o
f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs]
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knnimpute.f:168:0:

       ratio=dabs(dnew-dold)/dold
 
Warning: ‘dold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o impute.so knnimpute.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/impute.buildbin-libdir/00LOCK-impute/00new/impute/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (impute)


>>>>>>> 
>>>>>>> FIXING LINKS FOR impute.buildbin-libdir/impute/libs//impute.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "impute.buildbin-libdir/impute/libs//impute.so"