Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:56:07 -0400 (Tue, 09 Apr 2019).
Package 590/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gaga 2.29.1 David Rossell
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: gaga |
Version: 2.29.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gaga_2.29.1.tar.gz && rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gaga_2.29.1.zip && rm gaga_2.29.1.tar.gz gaga_2.29.1.zip |
StartedAt: 2019-04-08 18:50:38 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 18:51:53 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 74.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gaga_2.29.1.tar.gz && rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gaga_2.29.1.zip && rm gaga_2.29.1.tar.gz gaga_2.29.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 126k 100 126k 0 0 1652k 0 --:--:-- --:--:-- --:--:-- 1827k install for i386 * installing *source* package 'gaga' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c cseqdesma.c -o cseqdesma.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c cstat.c -o cstat.o cstat.c: In function 'qnormC': cstat.c:1638:3: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] return y; ^ cstat.c: In function 'pnormC': cstat.c:1552:5: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized] p, q, mean,sd,bound,x,z; ^ C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/gaga.buildbin-libdir/00LOCK-gaga/00new/gaga/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gaga' finding HTML links ... done buildPatterns html checkfit html classpred html dcgamma html findgenes html fitGG html forwsimDiffExpr html geneclus html getpar html parest html plotForwSim html posmeansGG html powclasspred html powfindgenes html print.gagaclus html print.gagafit html print.gagahyp html seqBoundariesGrid html simGG html simnewsamples html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gaga' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c cseqdesma.c -o cseqdesma.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c cstat.c -o cstat.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/gaga.buildbin-libdir/gaga/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'gaga' as gaga_2.29.1.zip * DONE (gaga) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'gaga' successfully unpacked and MD5 sums checked