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BUILD BIN report for fgsea on tokay2

This page was generated on 2019-04-09 12:26:51 -0400 (Tue, 09 Apr 2019).

Package 539/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fgsea 1.9.5
Alexey Sergushichev
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/fgsea
Branch: master
Last Commit: 2305b38
Last Changed Date: 2019-03-20 10:58:20 -0400 (Wed, 20 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: fgsea
Version: 1.9.5
Command: rm -rf fgsea.buildbin-libdir && mkdir fgsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fgsea.buildbin-libdir fgsea_1.9.5.tar.gz
StartedAt: 2019-04-09 07:54:09 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 07:55:05 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 56.1 seconds
RetCode: 0
Status:  OK  
PackageFile: fgsea_1.9.5.zip
PackageFileSize: 1.333 MiB

Command output

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###
### Running command:
###
###   rm -rf fgsea.buildbin-libdir && mkdir fgsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fgsea.buildbin-libdir fgsea_1.9.5.tar.gz
###
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install for i386

* installing *source* package 'fgsea' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c esCalculation.cpp -o esCalculation.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fastGSEA.cpp -o fastGSEA.o
fastGSEA.cpp: In function 'Rcpp::NumericVector calcGseaStatBatchCpp(const NumericVector&, const List&, const IntegerVector&)':
fastGSEA.cpp:444:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int j = 0; j < S.size(); ++j) {
                           ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fgseaMultilevel.cpp -o fgseaMultilevel.o
fgseaMultilevel.cpp: In function 'Rcpp::NumericVector fgseaMultilevelCpp(const NumericVector&, const NumericVector&, int, int, int, double, bool)':
fgseaMultilevel.cpp:15:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < posRanks.size(); i++) {
                       ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fgseaMultilevelSupplement.cpp -o fgseaMultilevelSupplement.o
fgseaMultilevelSupplement.cpp: In function 'void fillRandomSample(std::set<int>&, std::mt19937&, long unsigned int, unsigned int)':
fgseaMultilevelSupplement.cpp:43:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     while (static_cast<int>(randomSample.size()) < pathwaySize) {
                                                  ^
fgseaMultilevelSupplement.cpp: In member function 'void EsRuler::duplicateSamples()':
fgseaMultilevelSupplement.cpp:68:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; sampleId < sampleSize; sampleId++) {
                                     ^
fgseaMultilevelSupplement.cpp:78:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; 2 * sampleId < sampleSize; sampleId++) {
                                         ^
fgseaMultilevelSupplement.cpp:87:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; 2 * sampleId < sampleSize - 2; sampleId++) {
                                         ^
fgseaMultilevelSupplement.cpp: In member function 'void EsRuler::extend(double, int, double)':
fgseaMultilevelSupplement.cpp:101:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; sampleId < sampleSize; sampleId++) {
                                     ^
fgseaMultilevelSupplement.cpp:119:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int moves = 0; moves < sampleSize * pathwaySize;) {
                                   ^
fgseaMultilevelSupplement.cpp:120:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (int sample_id = 0; sample_id < sampleSize; sample_id++) {
                                               ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c fgsea_init.c -o fgsea_init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o fgsea.dll tmp.def RcppExports.o esCalculation.o fastGSEA.o fgseaMultilevel.o fgseaMultilevelSupplement.o fgsea_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/fgsea.buildbin-libdir/00LOCK-fgsea/00new/fgsea/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fgsea'
    finding HTML links ... done
    calcGseaStat                            html  
    calcGseaStatBatchCpp                    html  
    collapsePathways                        html  
    examplePathways                         html  
    exampleRanks                            html  
    fgsea                                   html  
    fgseaLabel                              html  
    fgseaMultilevel                         html  
    fgseaSimpleImpl                         html  
    gmtPathways                             html  
    multilevelError                         html  
    multilevelImpl                          html  
    plotEnrichment                          html  
    plotGseaTable                           html  
    reactomePathways                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fgsea' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c esCalculation.cpp -o esCalculation.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fastGSEA.cpp -o fastGSEA.o
fastGSEA.cpp: In function 'Rcpp::NumericVector calcGseaStatBatchCpp(const NumericVector&, const List&, const IntegerVector&)':
fastGSEA.cpp:444:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int j = 0; j < S.size(); ++j) {
                           ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fgseaMultilevel.cpp -o fgseaMultilevel.o
fgseaMultilevel.cpp: In function 'Rcpp::NumericVector fgseaMultilevelCpp(const NumericVector&, const NumericVector&, int, int, int, double, bool)':
fgseaMultilevel.cpp:15:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < posRanks.size(); i++) {
                       ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fgseaMultilevelSupplement.cpp -o fgseaMultilevelSupplement.o
fgseaMultilevelSupplement.cpp: In function 'void fillRandomSample(std::set<int>&, std::mt19937&, long unsigned int, unsigned int)':
fgseaMultilevelSupplement.cpp:43:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     while (static_cast<int>(randomSample.size()) < pathwaySize) {
                                                  ^
fgseaMultilevelSupplement.cpp: In member function 'void EsRuler::duplicateSamples()':
fgseaMultilevelSupplement.cpp:68:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; sampleId < sampleSize; sampleId++) {
                                     ^
fgseaMultilevelSupplement.cpp:78:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; 2 * sampleId < sampleSize; sampleId++) {
                                         ^
fgseaMultilevelSupplement.cpp:87:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; 2 * sampleId < sampleSize - 2; sampleId++) {
                                         ^
fgseaMultilevelSupplement.cpp: In member function 'void EsRuler::extend(double, int, double)':
fgseaMultilevelSupplement.cpp:101:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int sampleId = 0; sampleId < sampleSize; sampleId++) {
                                     ^
fgseaMultilevelSupplement.cpp:119:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int moves = 0; moves < sampleSize * pathwaySize;) {
                                   ^
fgseaMultilevelSupplement.cpp:120:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (int sample_id = 0; sample_id < sampleSize; sample_id++) {
                                               ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c fgsea_init.c -o fgsea_init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o fgsea.dll tmp.def RcppExports.o esCalculation.o fastGSEA.o fgseaMultilevel.o fgseaMultilevelSupplement.o fgsea_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/fgsea.buildbin-libdir/fgsea/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fgsea' as fgsea_1.9.5.zip
* DONE (fgsea)